1 HisKA#1
43-106 aa · 64 aa · 24.1% of protein
Raw token
HisKA:43:0.0000000000000502:106:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AWN51_RS07375
Histidine kinase, Classic
Enterococcus faecium · GCF_001543555
ClassHKTypeClassicLength266 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001543555#AWN51_RS07375Stable P2CS identifier used across views.
GenomeGCF_001543555Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length266 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 266 aa (66.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa266 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
155-266 aa · 112 aa · 42.1% of protein
Raw token
HATPase_c:155:2.77e-27:266:113:109- Raw architecture: HisKA:43:0.0000000000000502:106:64:64#HATPase_c:155:2.77e-27:266:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001543555::NZ_LRAS01000177.1::G00013
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1-799Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAWN51_07395RefSeq proteinWP_060775985.1
Context group ID
GCF_001543555::NZ_LRAS01000177.1::G00013Context members
AWN51_RS07375
Partner locus tags
AWN51_RS07375
Partner old locus tags
AWN51_07395
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_060775985.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAWN51_RS07375Primary locus identifier stored in the genes table.
Old locus tagAWN51_07395Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LRAS01000177.1Sequence record reported by the local genomic context database.
Genomic interval1-799 nt799 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-799 ntGCF_001543555::NZ_LRAS01000177.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001543555::NZ_LRAS01000177.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LRAS01000177.1All displayed genes belong to this local TCS context.
Neighborhood span1-799 nt799 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt799 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AWN51_RS07375GCF_001543555#AWN51_RS07375
HKClassicCurrent focus
1-799 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001543565#AWN56_RS12365Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2770837
Simplified PFAM architecture for HKOC_2770837
PFAM domain coverage: 174 / 356 aa (48.9%)
1 aa356 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[132-194] | HATPase_c[243-353]
- Domain count: 2
- Matched identifier: HKOC_2770837
- Positioned domains: HisKA 132-194 ; HATPase_c 243-353
Cluster members and taxonomy
Representative gene: GCF_001543565#AWN56_RS12365
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 352 · GCF_001543555
AssemblyASM154355v1 · Scaffoldhaploid
Genome composition3 170 658 bp · 38,0% GCEnterococcus faecium
Signal transduction countsGenes 46 · HK 22 · RR 24CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key