1 HisKA_3#1
184-244 aa · 61 aa · 10.2% of protein
Raw token
HisKA_3:184:0.00000000000000392:244:63:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AWW70_RS01310
Histidine kinase, Hybrid
Bacillus mycoides · GCF_001541985
ClassHKTypeHybridLength596 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001541985#AWW70_RS01310Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_cResponse_regHTH_LUXR
Protein length596 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage313 / 596 aa (52.5%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_c,1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation4 items
2 HATPase_c#2
291-375 aa · 85 aa · 14.3% of protein
Raw token
HATPase_c:291:1.47e-16:375:103:1093 Response_reg#3
387-497 aa · 111 aa · 18.6% of protein
Raw token
Response_reg:387:1.87e-30:497:111:1114 HTH_LUXR#4
534-589 aa · 56 aa · 9.4% of protein
Raw token
HTH_LUXR:534:1.64e-18:589:56:58- Raw architecture: HisKA_3:184:0.00000000000000392:244:63:68#HATPase_c:291:1.47e-16:375:103:109#Response_reg:387:1.87e-30:497:111:111#HTH_LUXR:534:1.64e-18:589:56:58
- Domain description: 1 HisKA_3,1 HATPase_c,1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001541985::NZ_LRPH01000013.1::G00006
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span3639-5429Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAWW70_04150RefSeq proteinWP_060749060.1
Context group ID
GCF_001541985::NZ_LRPH01000013.1::G00006Context members
AWW70_RS01310
Partner locus tags
AWW70_RS01310
Partner old locus tags
AWW70_04150
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_060749060.1Primary protein accession used for annex mappings.
UniProt accessionA0A109GJI9Primary UniProt accession resolved in the annex database.
UniProt IDA0A109GJI9_BACMYDisplay identifier provided by UniProt.
GO / PubMed7 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAWW70_RS01310Primary locus identifier stored in the genes table.
Old locus tagAWW70_04150Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LRPH01000013.1Sequence record reported by the local genomic context database.
Genomic interval3 639-5 429 nt1 791 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 639-5 429 ntGCF_001541985::NZ_LRPH01000013.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001541985::NZ_LRPH01000013.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LRPH01000013.1All displayed genes belong to this local TCS context.
Neighborhood span3 639-5 429 nt1 791 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 639 nt5 429 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AWW70_RS01310GCF_001541985#AWW70_RS01310
HKHybridCurrent focus
3 639-5 429 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001541985#AWW70_RS01310The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c + Response_reg + GerE4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1074256
Simplified PFAM architecture for HKOC_1074256
PFAM domain coverage: 315 / 596 aa (52.9%)
1 aa596 aa
HisKA_3HATPase_cResponse_regGerE
- Simplified architecture: HisKA_3 + HATPase_c + Response_reg + GerE
- Raw architecture: HisKA_3[184-245] | HATPase_c[289-375] | Response_reg[386-496] | GerE[535-589]
- Domain count: 4
- Matched identifier: HKOC_1074256
- Positioned domains: HisKA_3 184-245 ; HATPase_c 289-375 ; Response_reg 386-496 ; GerE 535-589
Cluster members and taxonomy
Representative gene: GCF_001541985#AWW70_RS01310
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_001541985
AssemblyASM154198v1 · Contighaploid
Genome composition5 918 334 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 130 · HK 72 · RR 58CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key