1 HAMP#1
83-150 aa · 68 aa · 18.0% of protein
Raw token
HAMP:83:0.00000000473:150:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BN3261_RS06270
Histidine kinase, Classic
Blautia massiliensis (ex Durand et al. 2017) · GCF_001487165
ClassHKTypeClassicLength378 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001487165#BN3261_RS06270Stable P2CS identifier used across views.
GenomeGCF_001487165Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length378 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage232 / 378 aa (61.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa378 aa
Domain-by-domain annotation3 items
2 HisKA#2
162-222 aa · 61 aa · 16.1% of protein
Raw token
HisKA:162:0.0000000000207:222:61:643 HATPase_c#3
275-377 aa · 103 aa · 27.2% of protein
Raw token
HATPase_c:275:2.69e-26:377:106:109- Raw architecture: HAMP:83:0.00000000473:150:68:69#HisKA:162:0.0000000000207:222:61:64#HATPase_c:275:2.69e-26:377:106:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001487165::NZ_LN913006.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1155246-1157329Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_001487165::NZ_LN913006.1::G00020Context members
BN3261_RS06265BN3261_RS06270
Partner locus tags
BN3261_RS06265BN3261_RS06270
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_235812348.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBN3261_RS06270Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_LN913006.1Sequence record reported by the local genomic context database.
Genomic interval1 156 193-1 157 329 nt1 137 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 155 246-1 157 329 ntGCF_001487165::NZ_LN913006.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001487165::NZ_LN913006.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LN913006.1All displayed genes belong to this local TCS context.
Neighborhood span1 155 246-1 157 329 nt2 084 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 155 246 nt1 157 329 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BN3261_RS06265GCF_001487165#BN3261_RS06265
RROmpR
1 155 246-1 155 911 nt · Forward (+)
BN3261_RS06270GCF_001487165#BN3261_RS06270
HKClassicCurrent focus
1 156 193-1 157 329 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001487165#BN3261_RS06270The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2627375
Simplified PFAM architecture for HKOC_2627375
PFAM domain coverage: 213 / 378 aa (56.3%)
1 aa378 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[100-149] | HisKA[162-221] | HATPase_c[275-377]
- Domain count: 3
- Matched identifier: HKOC_2627375
- Positioned domains: HAMP 100-149 ; HisKA 162-221 ; HATPase_c 275-377
Cluster members and taxonomy
Representative gene: GCF_001487165#BN3261_RS06270
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 737 424 · GCF_001487165
AssemblyBlautia massiliensis1 · Scaffoldhaploid
Genome composition3 717 343 bp · 44,0% GCBlautia massiliensis (ex Durand et al. 2017)
Signal transduction countsGenes 89 · HK 41 · RR 47CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key