1 Response_reg#1
131-247 aa · 117 aa · 46.2% of protein
Raw token
Response_reg:131:2.64e-29:247:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BN3261_RS06250
Response regulator, unclassified
Blautia massiliensis (ex Durand et al. 2017) · GCF_001487165
ClassRRTypeunclassifiedLength253 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001487165#BN3261_RS06250Stable P2CS identifier used across views.
GenomeGCF_001487165Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length253 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage117 / 253 aa (46.2%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa253 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:131:2.64e-29:247:117:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001487165::NZ_LN913006.1::G00019
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1151413-1152174Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_001487165::NZ_LN913006.1::G00019Context members
BN3261_RS06250
Partner locus tags
BN3261_RS06250
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_268872681.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBN3261_RS06250Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_LN913006.1Sequence record reported by the local genomic context database.
Genomic interval1 151 413-1 152 174 nt762 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 151 413-1 152 174 ntGCF_001487165::NZ_LN913006.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001487165::NZ_LN913006.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LN913006.1All displayed genes belong to this local TCS context.
Neighborhood span1 151 413-1 152 174 nt762 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 151 413 nt1 152 174 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BN3261_RS06250GCF_001487165#BN3261_RS06250
RRunclassifiedCurrent focus
1 151 413-1 152 174 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001487165#BN3261_RS06250The current gene is the representative for this cluster.
PFAM architectureHATPase_c + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0696232
Simplified PFAM architecture for RROC_0696232
PFAM domain coverage: 225 / 253 aa (88.9%)
1 aa253 aa
HATPase_cResponse_reg
- Simplified architecture: HATPase_c + Response_reg
- Raw architecture: HATPase_c[1-108] | Response_reg[131-247]
- Domain count: 2
- Matched identifier: RROC_0696232
- Positioned domains: HATPase_c 1-108 ; HATPase_c 1-108 ; Response_reg 131-247 ; Response_reg 131-247
Cluster members and taxonomy
Representative gene: GCF_001487165#BN3261_RS06250
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 737 424 · GCF_001487165
AssemblyBlautia massiliensis1 · Scaffoldhaploid
Genome composition3 717 343 bp · 44,0% GCBlautia massiliensis (ex Durand et al. 2017)
Signal transduction countsGenes 89 · HK 41 · RR 47CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key