1 HAMP#1
210-274 aa · 65 aa · 11.6% of protein
Raw token
HAMP:210:0.0000000000000363:274:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA23_RS06630
Histidine kinase, Classic
Bifidobacterium adolescentis · GCF_001406735
ClassHKTypeClassicLength559 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406735#ARA23_RS06630Stable P2CS identifier used across views.
GenomeGCF_001406735Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length559 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 559 aa (43.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa559 aa
Domain-by-domain annotation3 items
2 HisKA#2
285-352 aa · 68 aa · 12.2% of protein
Raw token
HisKA:285:0.00000000000000189:352:68:643 HATPase_c#3
399-509 aa · 111 aa · 19.9% of protein
Raw token
HATPase_c:399:2.39e-31:509:111:109- Raw architecture: HAMP:210:0.0000000000000363:274:67:69#HisKA:285:0.00000000000000189:352:68:64#HATPase_c:399:2.39e-31:509:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406735::NZ_CYYG01000006.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span126556-128982Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852419_01341RefSeq proteinWP_055309148.1
Context group ID
GCF_001406735::NZ_CYYG01000006.1::G00008Context members
ARA23_RS06625ARA23_RS06630
Partner locus tags
ARA23_RS06625ARA23_RS06630
Partner old locus tags
ERS852419_01340ERS852419_01341
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055309148.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA23_RS06630Primary locus identifier stored in the genes table.
Old locus tagERS852419_01341Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYG01000006.1Sequence record reported by the local genomic context database.
Genomic interval127 303-128 982 nt1 680 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span126 556-128 982 ntGCF_001406735::NZ_CYYG01000006.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406735::NZ_CYYG01000006.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYG01000006.1All displayed genes belong to this local TCS context.
Neighborhood span126 556-128 982 nt2 427 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
126 556 nt128 982 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA23_RS06625GCF_001406735#ARA23_RS06625
RROmpR
126 556-127 293 nt · Forward (+)
ARA23_RS06630GCF_001406735#ARA23_RS06630
HKClassicCurrent focus
127 303-128 982 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406735#ARA23_RS06630The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1261978
Simplified PFAM architecture for HKOC_1261978
PFAM domain coverage: 229 / 559 aa (41.0%)
1 aa559 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[223-273] | HisKA[285-352] | HATPase_c[399-508]
- Domain count: 3
- Matched identifier: HKOC_1261978
- Positioned domains: HAMP 223-273 ; HisKA 285-352 ; HATPase_c 399-508
Cluster members and taxonomy
Representative gene: GCF_001406735#ARA23_RS06630
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_001406735
Assembly13414_6#46 · Scaffoldhaploid
Genome composition2 259 076 bp · 59,5% GCBifidobacterium adolescentis
Signal transduction countsGenes 27 · HK 12 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key