1 HisKA#1
97-159 aa · 63 aa · 20.1% of protein
Raw token
HisKA:97:0.0000000271:159:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA43_RS09990
Histidine kinase, Classic
Clostridium paraputrificum · GCF_001406515
ClassHKTypeClassicLength313 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406515#ARA43_RS09990Stable P2CS identifier used across views.
GenomeGCF_001406515Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length313 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage163 / 313 aa (52.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa313 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
211-310 aa · 100 aa · 31.9% of protein
Raw token
HATPase_c:211:9.83e-24:310:100:109- Raw architecture: HisKA:97:0.0000000271:159:63:64#HATPase_c:211:9.83e-24:310:100:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406515::NZ_CZBQ01000009.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span69063-70770Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852567_02067RefSeq proteinWP_051195960.1
Context group ID
GCF_001406515::NZ_CZBQ01000009.1::G00024Context members
ARA43_RS09985ARA43_RS09990
Partner locus tags
ARA43_RS09985ARA43_RS09990
Partner old locus tags
ERS852567_02066ERS852567_02067
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_051195960.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA43_RS09990Primary locus identifier stored in the genes table.
Old locus tagERS852567_02067Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBQ01000009.1Sequence record reported by the local genomic context database.
Genomic interval69 829-70 770 nt942 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span69 063-70 770 ntGCF_001406515::NZ_CZBQ01000009.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406515::NZ_CZBQ01000009.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBQ01000009.1All displayed genes belong to this local TCS context.
Neighborhood span69 063-70 770 nt1 708 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
69 063 nt70 770 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA43_RS09985GCF_001406515#ARA43_RS09985
RROmpR
69 063-69 749 nt · Forward (+)
ARA43_RS09990GCF_001406515#ARA43_RS09990
HKClassicCurrent focus
69 829-70 770 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424025#G594_RS0109250Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2875096
Simplified PFAM architecture for HKOC_2875096
PFAM domain coverage: 166 / 313 aa (53.0%)
1 aa313 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[95-159] | HATPase_c[210-310]
- Domain count: 2
- Matched identifier: HKOC_2875096
- Positioned domains: HisKA 95-159 ; HATPase_c 210-310
Cluster members and taxonomy
Representative gene: GCF_000424025#G594_RS0109250
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_001406515
Assembly14207_7#78 · Scaffoldhaploid
Genome composition3 671 430 bp · 30,0% GCClostridium paraputrificum
Signal transduction countsGenes 71 · HK 37 · RR 31CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key