1 HAMP#1
185-253 aa · 69 aa · 11.1% of protein
Raw token
HAMP:185:0.000000114:253:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA43_RS09045
Histidine kinase, Classic
Clostridium paraputrificum · GCF_001406515
ClassHKTypeClassicLength621 aaTM0ValidatedNoCompleteYesContexttetrad
Gene IDGCF_001406515#ARA43_RS09045Stable P2CS identifier used across views.
GenomeGCF_001406515Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HAMPPASHisKAHATPase_c
Protein length621 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage357 / 621 aa (57.5%)Merged over positioned domains only.
Domain description1 HAMP,1 PAS,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa621 aa
Domain-by-domain annotation4 items
2 PAS#2
270-376 aa · 107 aa · 17.2% of protein
Raw token
PAS:270:0.0000000428:376:110:1133 HisKA#3
385-452 aa · 68 aa · 11.0% of protein
Raw token
HisKA:385:9.82e-22:452:68:644 HATPase_c#4
498-610 aa · 113 aa · 18.2% of protein
Raw token
HATPase_c:498:1.65e-26:610:113:109- Raw architecture: HAMP:185:0.000000114:253:69:69#PAS:270:0.0000000428:376:110:113#HisKA:385:9.82e-22:452:68:64#HATPase_c:498:1.65e-26:610:113:109
- Domain description: 1 HAMP,1 PAS,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltetradGCF_001406515::NZ_CZBQ01000008.1::G00021
Group size44 locus tags listed below.
HK / RR2 / 2Counts resolved for the local TCS neighborhood.
Context span33822-39726Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852567_01875RefSeq proteinWP_055184246.1
Context group ID
GCF_001406515::NZ_CZBQ01000008.1::G00021Context members
ARA43_RS09040ARA43_RS09045ARA43_RS09050ARA43_RS09055
Partner locus tags
ARA43_RS09040ARA43_RS09045ARA43_RS09050ARA43_RS09055
Partner old locus tags
ERS852567_01874ERS852567_01875ERS852567_01876ERS852567_01877
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055184246.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA43_RS09045Primary locus identifier stored in the genes table.
Old locus tagERS852567_01875Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBQ01000008.1Sequence record reported by the local genomic context database.
Genomic interval34 462-36 327 nt1 866 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span33 822-39 726 ntGCF_001406515::NZ_CZBQ01000008.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406515::NZ_CZBQ01000008.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltetradNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBQ01000008.1All displayed genes belong to this local TCS context.
Neighborhood span33 822-39 726 nt5 905 nt
Members41 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
33 822 nt39 726 nt
Neighborhood gene cards
4 genes in the current local neighborhood.
ARA43_RS09040GCF_001406515#ARA43_RS09040
RRunclassified
33 822-34 484 nt · Reverse (-)
ARA43_RS09045GCF_001406515#ARA43_RS09045
HKClassicCurrent focus
34 462-36 327 nt · Reverse (-)
ARA43_RS09050GCF_001406515#ARA43_RS09050
RROmpR
36 348-37 040 nt · Reverse (-)
ARA43_RS09055GCF_001406515#ARA43_RS09055
HKClassic
37 009-39 726 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406515#ARA43_RS09045The current gene is the representative for this cluster.
PFAM architecturePAS + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0970285
Simplified PFAM architecture for HKOC_0970285
PFAM domain coverage: 256 / 621 aa (41.2%)
1 aa621 aa
PASHisKAHATPase_c
- Simplified architecture: PAS + HisKA + HATPase_c
- Raw architecture: PAS[269-344] | HisKA[385-452] | HATPase_c[499-610]
- Domain count: 3
- Matched identifier: HKOC_0970285
- Positioned domains: PAS 269-344 ; HisKA 385-452 ; HATPase_c 499-610
Cluster members and taxonomy
Representative gene: GCF_001406515#ARA43_RS09045
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_001406515
Assembly14207_7#78 · Scaffoldhaploid
Genome composition3 671 430 bp · 30,0% GCClostridium paraputrificum
Signal transduction countsGenes 71 · HK 37 · RR 31CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key