1 Response_reg#1
6-119 aa · 114 aa · 21.4% of protein
Raw token
Response_reg:6:1.12e-30:119:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA43_RS07760
Response regulator, unclassified
Clostridium paraputrificum · GCF_001406515
ClassRRTypeunclassifiedLength532 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406515#ARA43_RS07760Stable P2CS identifier used across views.
GenomeGCF_001406515Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length532 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage188 / 532 aa (35.3%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa532 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
438-480 aa · 43 aa · 8.1% of protein
Raw token
HTH_AraC:438:0.0000000509:480:43:423 HTH_AraC#3
500-530 aa · 31 aa · 5.8% of protein
Raw token
HTH_AraC:500:0.000000296:530:31:42- Raw architecture: Response_reg:6:1.12e-30:119:114:111#HTH_AraC:438:0.0000000509:480:43:42#HTH_AraC:500:0.000000296:530:31:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406515::NZ_CZBQ01000006.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span130366-133758Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852567_01609RefSeq proteinWP_027097133.1
Context group ID
GCF_001406515::NZ_CZBQ01000006.1::G00017Context members
ARA43_RS07755ARA43_RS07760
Partner locus tags
ARA43_RS07755ARA43_RS07760
Partner old locus tags
ERS852567_01608ERS852567_01609
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_027097133.1Primary protein accession used for annex mappings.
UniProt accessionA0A174UNM1Primary UniProt accession resolved in the annex database.
UniProt IDA0A174UNM1_9CLOTDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA43_RS07760Primary locus identifier stored in the genes table.
Old locus tagERS852567_01609Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBQ01000006.1Sequence record reported by the local genomic context database.
Genomic interval132 160-133 758 nt1 599 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span130 366-133 758 ntGCF_001406515::NZ_CZBQ01000006.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406515::NZ_CZBQ01000006.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBQ01000006.1All displayed genes belong to this local TCS context.
Neighborhood span130 366-133 758 nt3 393 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
130 366 nt133 758 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA43_RS07755GCF_001406515#ARA43_RS07755
HKClassic
130 366-132 150 nt · Reverse (-)
ARA43_RS07760GCF_001406515#ARA43_RS07760
RRunclassifiedCurrent focus
132 160-133 758 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424025#G594_RS0102590Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0107889
Simplified PFAM architecture for RROC_0107889
PFAM domain coverage: 317 / 532 aa (59.6%)
1 aa532 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[6-118] | GGDEF_2[167-292] | HTH_18[453-530]
- Domain count: 3
- Matched identifier: RROC_0107889
- Positioned domains: Response_reg 6-118 ; Response_reg 6-118 ; GGDEF_2 167-292 ; GGDEF_2 167-292 ; HTH_18 453-530 ; HTH_18 453-530
Cluster members and taxonomy
Representative gene: GCF_000424025#G594_RS0102590
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_001406515
Assembly14207_7#78 · Scaffoldhaploid
Genome composition3 671 430 bp · 30,0% GCClostridium paraputrificum
Signal transduction countsGenes 71 · HK 37 · RR 31CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key