1 HAMP#1
168-237 aa · 70 aa · 14.9% of protein
Raw token
HAMP:168:0.00000000000000108:237:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA43_RS07135
Histidine kinase, Classic
Clostridium paraputrificum · GCF_001406515
ClassHKTypeClassicLength470 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406515#ARA43_RS07135Stable P2CS identifier used across views.
GenomeGCF_001406515Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length470 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage242 / 470 aa (51.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa470 aa
Domain-by-domain annotation3 items
2 HisKA#2
242-307 aa · 66 aa · 14.0% of protein
Raw token
HisKA:242:6.01e-17:307:66:643 HATPase_c#3
354-459 aa · 106 aa · 22.6% of protein
Raw token
HATPase_c:354:3.44e-32:459:107:109- Raw architecture: HAMP:168:0.00000000000000108:237:70:69#HisKA:242:6.01e-17:307:66:64#HATPase_c:354:3.44e-32:459:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406515::NZ_CZBQ01000005.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span231980-234088Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852567_01480RefSeq proteinWP_027099819.1
Context group ID
GCF_001406515::NZ_CZBQ01000005.1::G00016Context members
ARA43_RS07135ARA43_RS07140
Partner locus tags
ARA43_RS07135ARA43_RS07140
Partner old locus tags
ERS852567_01480ERS852567_01481
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_027099819.1Primary protein accession used for annex mappings.
UniProt accessionA0A174E932Primary UniProt accession resolved in the annex database.
UniProt IDA0A174E932_9CLOTDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA43_RS07135Primary locus identifier stored in the genes table.
Old locus tagERS852567_01480Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBQ01000005.1Sequence record reported by the local genomic context database.
Genomic interval231 980-233 392 nt1 413 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span231 980-234 088 ntGCF_001406515::NZ_CZBQ01000005.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406515::NZ_CZBQ01000005.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBQ01000005.1All displayed genes belong to this local TCS context.
Neighborhood span231 980-234 088 nt2 109 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
231 980 nt234 088 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA43_RS07135GCF_001406515#ARA43_RS07135
HKClassicCurrent focus
231 980-233 392 nt · Reverse (-)
ARA43_RS07140GCF_001406515#ARA43_RS07140
RROmpR
233 396-234 088 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424025#G594_RS0118005Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1717466
Simplified PFAM architecture for HKOC_1717466
PFAM domain coverage: 223 / 470 aa (47.4%)
1 aa470 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[186-236] | HisKA[242-307] | HATPase_c[354-459]
- Domain count: 3
- Matched identifier: HKOC_1717466
- Positioned domains: HAMP 186-236 ; HisKA 242-307 ; HATPase_c 354-459
Cluster members and taxonomy
Representative gene: GCF_000424025#G594_RS0118005
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_001406515
Assembly14207_7#78 · Scaffoldhaploid
Genome composition3 671 430 bp · 30,0% GCClostridium paraputrificum
Signal transduction countsGenes 71 · HK 37 · RR 31CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key