1 PAS#1
308-415 aa · 108 aa · 15.5% of protein
Raw token
PAS:308:0.00000122:415:113:113P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA43_RS05075
Histidine kinase, Classic
Clostridium paraputrificum · GCF_001406515
ClassHKTypeClassicLength697 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001406515#ARA43_RS05075Stable P2CS identifier used across views.
GenomeGCF_001406515Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
PASHisKAHATPase_c
Protein length697 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage288 / 697 aa (41.3%)Merged over positioned domains only.
Domain description1 PAS,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa697 aa
Domain-by-domain annotation3 items
2 HisKA#2
437-507 aa · 71 aa · 10.2% of protein
Raw token
HisKA:437:0.000000000000956:507:71:643 HATPase_c#3
554-662 aa · 109 aa · 15.6% of protein
Raw token
HATPase_c:554:2.33e-32:662:109:109- Raw architecture: PAS:308:0.00000122:415:113:113#HisKA:437:0.000000000000956:507:71:64#HATPase_c:554:2.33e-32:662:109:109
- Domain description: 1 PAS,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001406515::NZ_CZBQ01000004.1::G00011
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span63022-65115Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852567_01056RefSeq proteinWP_055183853.1
Context group ID
GCF_001406515::NZ_CZBQ01000004.1::G00011Context members
ARA43_RS05075
Partner locus tags
ARA43_RS05075
Partner old locus tags
ERS852567_01056
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055183853.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA43_RS05075Primary locus identifier stored in the genes table.
Old locus tagERS852567_01056Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBQ01000004.1Sequence record reported by the local genomic context database.
Genomic interval63 022-65 115 nt2 094 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span63 022-65 115 ntGCF_001406515::NZ_CZBQ01000004.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406515::NZ_CZBQ01000004.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBQ01000004.1All displayed genes belong to this local TCS context.
Neighborhood span63 022-65 115 nt2 094 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
63 022 nt65 115 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA43_RS05075GCF_001406515#ARA43_RS05075
HKClassicCurrent focus
63 022-65 115 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406515#ARA43_RS05075The current gene is the representative for this cluster.
PFAM architecturePAS + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0775692
Simplified PFAM architecture for HKOC_0775692
PFAM domain coverage: 283 / 697 aa (40.6%)
1 aa697 aa
PASHisKAHATPase_c
- Simplified architecture: PAS + HisKA + HATPase_c
- Raw architecture: PAS[309-410] | HisKA[437-507] | HATPase_c[554-663]
- Domain count: 3
- Matched identifier: HKOC_0775692
- Positioned domains: PAS 309-410 ; HisKA 437-507 ; HATPase_c 554-663
Cluster members and taxonomy
Representative gene: GCF_001406515#ARA43_RS05075
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_001406515
Assembly14207_7#78 · Scaffoldhaploid
Genome composition3 671 430 bp · 30,0% GCClostridium paraputrificum
Signal transduction countsGenes 71 · HK 37 · RR 31CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key