1 PAS_9#1
29-125 aa · 97 aa · 13.8% of protein
Raw token
PAS_9:29:0.000000188:125:97:102P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA43_RS05015
Histidine kinase, Classic
Clostridium paraputrificum · GCF_001406515
ClassHKTypeClassicLength701 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001406515#ARA43_RS05015Stable P2CS identifier used across views.
GenomeGCF_001406515Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
PAS_9PASHisKAHATPase_c
Protein length701 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage386 / 701 aa (55.1%)Merged over positioned domains only.
Domain description1 PAS_9,1 PAS,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa701 aa
Domain-by-domain annotation4 items
2 PAS#2
318-421 aa · 104 aa · 14.8% of protein
Raw token
PAS:318:0.0000534:421:110:1133 HisKA#3
440-510 aa · 71 aa · 10.1% of protein
Raw token
HisKA:440:4.75e-16:510:71:644 HATPase_c#4
557-670 aa · 114 aa · 16.3% of protein
Raw token
HATPase_c:557:2.18e-29:670:114:109- Raw architecture: PAS_9:29:0.000000188:125:97:102#PAS:318:0.0000534:421:110:113#HisKA:440:4.75e-16:510:71:64#HATPase_c:557:2.18e-29:670:114:109
- Domain description: 1 PAS_9,1 PAS,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001406515::NZ_CZBQ01000004.1::G00010
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span50180-52285Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852567_01044RefSeq proteinWP_055183847.1
Context group ID
GCF_001406515::NZ_CZBQ01000004.1::G00010Context members
ARA43_RS05015
Partner locus tags
ARA43_RS05015
Partner old locus tags
ERS852567_01044
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055183847.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA43_RS05015Primary locus identifier stored in the genes table.
Old locus tagERS852567_01044Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBQ01000004.1Sequence record reported by the local genomic context database.
Genomic interval50 180-52 285 nt2 106 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span50 180-52 285 ntGCF_001406515::NZ_CZBQ01000004.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406515::NZ_CZBQ01000004.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBQ01000004.1All displayed genes belong to this local TCS context.
Neighborhood span50 180-52 285 nt2 106 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
50 180 nt52 285 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA43_RS05015GCF_001406515#ARA43_RS05015
HKClassicCurrent focus
50 180-52 285 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406515#ARA43_RS05015The current gene is the representative for this cluster.
PFAM architecturePAS_9 + PAS_9 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0767305
Simplified PFAM architecture for HKOC_0767305
PFAM domain coverage: 334 / 701 aa (47.6%)
1 aa701 aa
PAS_9PAS_9HisKAHATPase_c
- Simplified architecture: PAS_9 + PAS_9 + HisKA + HATPase_c
- Raw architecture: PAS_9[29-124] | PAS_9[330-383] | HisKA[440-510] | HATPase_c[557-669]
- Domain count: 4
- Matched identifier: HKOC_0767305
- Positioned domains: PAS_9 29-124 ; PAS_9 330-383 ; HisKA 440-510 ; HATPase_c 557-669
Cluster members and taxonomy
Representative gene: GCF_001406515#ARA43_RS05015
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_001406515
Assembly14207_7#78 · Scaffoldhaploid
Genome composition3 671 430 bp · 30,0% GCClostridium paraputrificum
Signal transduction countsGenes 71 · HK 37 · RR 31CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key