1 PAS_3#1
512-570 aa · 59 aa · 4.5% of protein
Raw token
PAS_3:512:0.0000309:570:63:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA57_RS04080
Histidine kinase, Hybrid
[Clostridium] symbiosum · GCF_001406475
ClassHKTypeHybridLength1318 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001406475#ARA57_RS04080Stable P2CS identifier used across views.
GenomeGCF_001406475Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
PAS_3GGDEFHisKAHATPase_cResponse_reg
Protein length1318 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage513 / 1318 aa (38.9%)Merged over positioned domains only.
Domain description1 PAS_3,1 GGDEF,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1318 aa
Domain-by-domain annotation5 items
2 GGDEF#2
587-733 aa · 147 aa · 11.2% of protein
Raw token
GGDEF:587:0.0000000000104:733:159:1603 HisKA#3
939-1005 aa · 67 aa · 5.1% of protein
Raw token
HisKA:939:4.5e-17:1005:67:644 HATPase_c#4
1051-1172 aa · 122 aa · 9.3% of protein
Raw token
HATPase_c:1051:1.43e-28:1172:122:1095 Response_reg#5
1198-1315 aa · 118 aa · 9.0% of protein
Raw token
Response_reg:1198:2.39e-31:1315:118:111- Raw architecture: PAS_3:512:0.0000309:570:63:89#GGDEF:587:0.0000000000104:733:159:160#HisKA:939:4.5e-17:1005:67:64#HATPase_c:1051:1.43e-28:1172:122:109#Response_reg:1198:2.39e-31:1315:118:111
- Domain description: 1 PAS_3,1 GGDEF,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001406475::NZ_CYZY01000008.1::G00013
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span79163-83119Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852479_00829RefSeq proteinWP_055175487.1
Context group ID
GCF_001406475::NZ_CYZY01000008.1::G00013Context members
ARA57_RS04080
Partner locus tags
ARA57_RS04080
Partner old locus tags
ERS852479_00829
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055175487.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA57_RS04080Primary locus identifier stored in the genes table.
Old locus tagERS852479_00829Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZY01000008.1Sequence record reported by the local genomic context database.
Genomic interval79 163-83 119 nt3 957 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span79 163-83 119 ntGCF_001406475::NZ_CYZY01000008.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406475::NZ_CYZY01000008.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZY01000008.1All displayed genes belong to this local TCS context.
Neighborhood span79 163-83 119 nt3 957 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
79 163 nt83 119 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA57_RS04080GCF_001406475#ARA57_RS04080
HKHybridCurrent focus
79 163-83 119 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406475#ARA57_RS04080The current gene is the representative for this cluster.
PFAM architectureGGDEF + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0116530
Simplified PFAM architecture for HKOC_0116530
PFAM domain coverage: 459 / 1318 aa (34.8%)
1 aa1318 aa
GGDEFHisKAHATPase_cResponse_reg
- Simplified architecture: GGDEF + HisKA + HATPase_c + Response_reg
- Raw architecture: GGDEF[588-741] | HisKA[940-1005] | HATPase_c[1052-1172] | Response_reg[1198-1315]
- Domain count: 4
- Matched identifier: HKOC_0116530
- Positioned domains: GGDEF 588-741 ; HisKA 940-1005 ; HATPase_c 1052-1172 ; Response_reg 1198-1315
Cluster members and taxonomy
Representative gene: GCF_001406475#ARA57_RS04080
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_001406475
Assembly13470_2#83 · Scaffoldhaploid
Genome composition4 727 130 bp · 48,0% GC[Clostridium] symbiosum
Signal transduction countsGenes 99 · HK 47 · RR 49CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key