1 Hpt#1
8-93 aa · 86 aa · 12.4% of protein
Raw token
Hpt:8:0.000000000000315:93:86:84P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA57_RS03420
Histidine kinase, CheA
[Clostridium] symbiosum · GCF_001406475
ClassHKTypeCheALength693 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001406475#ARA57_RS03420Stable P2CS identifier used across views.
GenomeGCF_001406475Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
HptH-kinase_dimHATPase_cCheW
Protein length693 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage425 / 693 aa (61.3%)Merged over positioned domains only.
Domain description1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheWSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa693 aa
Domain-by-domain annotation4 items
2 H-kinase_dim#2
301-362 aa · 62 aa · 8.9% of protein
Raw token
H-kinase_dim:301:0.000000000000265:362:67:673 HATPase_c#3
409-549 aa · 141 aa · 20.3% of protein
Raw token
HATPase_c:409:2.05e-18:549:141:1094 CheW#4
554-689 aa · 136 aa · 19.6% of protein
Raw token
CheW:554:1.36e-21:689:138:138- Raw architecture: Hpt:8:0.000000000000315:93:86:84#H-kinase_dim:301:0.000000000000265:362:67:67#HATPase_c:409:2.05e-18:549:141:109#CheW:554:1.36e-21:689:138:138
- Domain description: 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001406475::NZ_CYZY01000007.1::G00010
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span50437-52518Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852479_00694RefSeq proteinWP_171032244.1
Context group ID
GCF_001406475::NZ_CYZY01000007.1::G00010Context members
ARA57_RS03420
Partner locus tags
ARA57_RS03420
Partner old locus tags
ERS852479_00694
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_171032244.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA57_RS03420Primary locus identifier stored in the genes table.
Old locus tagERS852479_00694Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZY01000007.1Sequence record reported by the local genomic context database.
Genomic interval50 437-52 518 nt2 082 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span50 437-52 518 ntGCF_001406475::NZ_CYZY01000007.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406475::NZ_CYZY01000007.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZY01000007.1All displayed genes belong to this local TCS context.
Neighborhood span50 437-52 518 nt2 082 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
50 437 nt52 518 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA57_RS03420GCF_001406475#ARA57_RS03420
HKCheACurrent focus
50 437-52 518 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406475#ARA57_RS03420The current gene is the representative for this cluster.
PFAM architectureHpt + P2 + H-kinase_dim + HATPase_c + CheW5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0784793
Simplified PFAM architecture for HKOC_0784793
PFAM domain coverage: 498 / 693 aa (71.9%)
1 aa693 aa
HptP2H-kinase_dimHATPase_cCheW
- Simplified architecture: Hpt + P2 + H-kinase_dim + HATPase_c + CheW
- Raw architecture: Hpt[8-90] | P2[170-250] | H-kinase_dim[301-361] | HATPase_c[410-549] | CheW[555-687]
- Domain count: 5
- Matched identifier: HKOC_0784793
- Positioned domains: Hpt 8-90 ; P2 170-250 ; H-kinase_dim 301-361 ; HATPase_c 410-549 ; CheW 555-687
Cluster members and taxonomy
Representative gene: GCF_001406475#ARA57_RS03420
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_001406475
Assembly13470_2#83 · Scaffoldhaploid
Genome composition4 727 130 bp · 48,0% GC[Clostridium] symbiosum
Signal transduction countsGenes 99 · HK 47 · RR 49CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key