1 H_kinase_N#1
7-143 aa · 137 aa · 39.0% of protein
Raw token
H_kinase_N:7:1.3e-34:143:137:139P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA57_RS02265
Histidine kinase, Classic
[Clostridium] symbiosum · GCF_001406475
ClassHKTypeClassicLength351 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406475#ARA57_RS02265Stable P2CS identifier used across views.
GenomeGCF_001406475Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
H_kinase_NHisKA_2HATPase_c
Protein length351 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage307 / 351 aa (87.5%)Merged over positioned domains only.
Domain description1 H_kinase_N,1 HisKA_2,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa351 aa
Domain-by-domain annotation3 items
2 HisKA_2#2
163-237 aa · 75 aa · 21.4% of protein
Raw token
HisKA_2:163:5.51e-23:237:76:763 HATPase_c#3
257-351 aa · 95 aa · 27.1% of protein
Raw token
HATPase_c:257:0.0000000000027:351:111:109- Raw architecture: H_kinase_N:7:1.3e-34:143:137:139#HisKA_2:163:5.51e-23:237:76:76#HATPase_c:257:0.0000000000027:351:111:109
- Domain description: 1 H_kinase_N,1 HisKA_2,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406475::NZ_CYZY01000005.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span13626-15405Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852479_00459RefSeq proteinWP_009297264.1
Context group ID
GCF_001406475::NZ_CYZY01000005.1::G00007Context members
ARA57_RS02260ARA57_RS02265
Partner locus tags
ARA57_RS02260ARA57_RS02265
Partner old locus tags
ERS852479_00458ERS852479_00459
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_009297264.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA57_RS02265Primary locus identifier stored in the genes table.
Old locus tagERS852479_00459Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZY01000005.1Sequence record reported by the local genomic context database.
Genomic interval14 350-15 405 nt1 056 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span13 626-15 405 ntGCF_001406475::NZ_CYZY01000005.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406475::NZ_CYZY01000005.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZY01000005.1All displayed genes belong to this local TCS context.
Neighborhood span13 626-15 405 nt1 780 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 626 nt15 405 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA57_RS02260GCF_001406475#ARA57_RS02260
RRAmiR_NasR
13 626-14 348 nt · Forward (+)
ARA57_RS02265GCF_001406475#ARA57_RS02265
HKClassicCurrent focus
14 350-15 405 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406475#ARA57_RS02265The current gene is the representative for this cluster.
PFAM architectureGAF_PdtaS + HisKA_2 + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2793105
Simplified PFAM architecture for HKOC_2793105
PFAM domain coverage: 305 / 351 aa (86.9%)
1 aa351 aa
GAF_PdtaSHisKA_2HATPase_c
- Simplified architecture: GAF_PdtaS + HisKA_2 + HATPase_c
- Raw architecture: GAF_PdtaS[6-143] | HisKA_2[163-237] | HATPase_c[259-350]
- Domain count: 3
- Matched identifier: HKOC_2793105
- Positioned domains: GAF_PdtaS 6-143 ; HisKA_2 163-237 ; HATPase_c 259-350
Cluster members and taxonomy
Representative gene: GCF_001406475#ARA57_RS02265
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_001406475
Assembly13470_2#83 · Scaffoldhaploid
Genome composition4 727 130 bp · 48,0% GC[Clostridium] symbiosum
Signal transduction countsGenes 99 · HK 47 · RR 49CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key