1 HisKA#1
127-193 aa · 67 aa · 18.9% of protein
Raw token
HisKA:127:0.0000000000000136:193:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA05_RS09470
Histidine kinase, Classic
Coprococcus comes · GCF_001406395
ClassHKTypeClassicLength355 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406395#ARA05_RS09470Stable P2CS identifier used across views.
GenomeGCF_001406395Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length355 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 355 aa (50.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa355 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
238-349 aa · 112 aa · 31.5% of protein
Raw token
HATPase_c:238:1.98e-27:349:112:109- Raw architecture: HisKA:127:0.0000000000000136:193:67:64#HATPase_c:238:1.98e-27:349:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406395::NZ_CYZK01000012.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span47710-49468Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852481_01962RefSeq proteinWP_242856267.1
Context group ID
GCF_001406395::NZ_CYZK01000012.1::G00024Context members
ARA05_RS09465ARA05_RS09470
Partner locus tags
ARA05_RS09465ARA05_RS09470
Partner old locus tags
ERS852481_01961ERS852481_01962
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_242856267.1Primary protein accession used for annex mappings.
UniProt accessionA0AA37VBX4Primary UniProt accession resolved in the annex database.
UniProt IDA0AA37VBX4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA05_RS09470Primary locus identifier stored in the genes table.
Old locus tagERS852481_01962Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZK01000012.1Sequence record reported by the local genomic context database.
Genomic interval48 401-49 468 nt1 068 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span47 710-49 468 ntGCF_001406395::NZ_CYZK01000012.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406395::NZ_CYZK01000012.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZK01000012.1All displayed genes belong to this local TCS context.
Neighborhood span47 710-49 468 nt1 759 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
47 710 nt49 468 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA05_RS09465GCF_001406395#ARA05_RS09465
RROmpR
47 710-48 411 nt · Reverse (-)
ARA05_RS09470GCF_001406395#ARA05_RS09470
HKClassicCurrent focus
48 401-49 468 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404595#AQ998_RS13125Use this link to inspect the representative gene detail.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2775521
Simplified PFAM architecture for HKOC_2775521
PFAM domain coverage: 282 / 355 aa (79.4%)
1 aa355 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[12-116] | HisKA[127-193] | HATPase_c[239-348]
- Domain count: 3
- Matched identifier: HKOC_2775521
- Positioned domains: DUF4118 12-116 ; HisKA 127-193 ; HATPase_c 239-348
Cluster members and taxonomy
Representative gene: GCF_001404595#AQ998_RS13125
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_001406395
Assembly13470_2#85 · Scaffoldhaploid
Genome composition3 284 337 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 76 · HK 36 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key