1 GGDEF#1
136-277 aa · 142 aa · 21.7% of protein
Raw token
GGDEF:136:1.94e-38:277:154:160P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA05_RS08060
Response regulator, RpfG family
Coprococcus comes · GCF_001406395
ClassRRTypeRpfGLength654 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001406395#ARA05_RS08060Stable P2CS identifier used across views.
GenomeGCF_001406395Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
GGDEFResponse_regHD
Protein length654 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage374 / 654 aa (57.2%)Merged over positioned domains only.
Domain description1 GGDEF,1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa654 aa
Domain-by-domain annotation3 items
2 Response_reg#2
306-410 aa · 105 aa · 16.1% of protein
Raw token
Response_reg:306:5.23e-28:410:106:1113 HD#3
473-599 aa · 127 aa · 19.4% of protein
Raw token
HD:473:0.000000000000274:599:127:110- Raw architecture: GGDEF:136:1.94e-38:277:154:160#Response_reg:306:5.23e-28:410:106:111#HD:473:0.000000000000274:599:127:110
- Domain description: 1 GGDEF,1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001406395::NZ_CYZK01000009.1::G00020
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span73028-74992Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852481_01669RefSeq proteinWP_055261213.1
Context group ID
GCF_001406395::NZ_CYZK01000009.1::G00020Context members
ARA05_RS08060
Partner locus tags
ARA05_RS08060
Partner old locus tags
ERS852481_01669
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055261213.1Primary protein accession used for annex mappings.
UniProt accessionA0A174DGJ4Primary UniProt accession resolved in the annex database.
UniProt IDA0A174DGJ4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA05_RS08060Primary locus identifier stored in the genes table.
Old locus tagERS852481_01669Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZK01000009.1Sequence record reported by the local genomic context database.
Genomic interval73 028-74 992 nt1 965 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span73 028-74 992 ntGCF_001406395::NZ_CYZK01000009.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406395::NZ_CYZK01000009.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZK01000009.1All displayed genes belong to this local TCS context.
Neighborhood span73 028-74 992 nt1 965 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
73 028 nt74 992 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA05_RS08060GCF_001406395#ARA05_RS08060
RRRpfGCurrent focus
73 028-74 992 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406395#ARA05_RS08060The current gene is the representative for this cluster.
PFAM architectureGGDEF + Response_reg + HD_53 domains in the representative PFAM annotation.
PFAM architecture for RROC_0035609
Simplified PFAM architecture for RROC_0035609
PFAM domain coverage: 385 / 654 aa (58.9%)
1 aa654 aa
GGDEFResponse_regHD_5
- Simplified architecture: GGDEF + Response_reg + HD_5
- Raw architecture: GGDEF[136-279] | Response_reg[306-416] | HD_5[491-620]
- Domain count: 3
- Matched identifier: RROC_0035609
- Positioned domains: GGDEF 136-279 ; GGDEF 136-279 ; Response_reg 306-416 ; Response_reg 306-416 ; HD_5 491-620 ; HD_5 491-620
Cluster members and taxonomy
Representative gene: GCF_001406395#ARA05_RS08060
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_001406395
Assembly13470_2#85 · Scaffoldhaploid
Genome composition3 284 337 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 76 · HK 36 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key