1 HAMP#1
293-362 aa · 70 aa · 11.8% of protein
Raw token
HAMP:293:0.00000000000212:362:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA05_RS04620
Histidine kinase, Classic
Coprococcus comes · GCF_001406395
ClassHKTypeClassicLength593 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406395#ARA05_RS04620Stable P2CS identifier used across views.
GenomeGCF_001406395Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length593 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage258 / 593 aa (43.5%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa593 aa
Domain-by-domain annotation3 items
2 His_kinase#2
377-451 aa · 75 aa · 12.6% of protein
Raw token
His_kinase:377:9.83e-34:451:75:803 HATPase_c#3
472-584 aa · 113 aa · 19.1% of protein
Raw token
HATPase_c:472:0.0000000000667:584:113:109- Raw architecture: HAMP:293:0.00000000000212:362:70:69#His_kinase:377:9.83e-34:451:75:80#HATPase_c:472:0.0000000000667:584:113:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406395::NZ_CYZK01000004.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span157895-161271Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852481_00948RefSeq proteinWP_055260814.1
Context group ID
GCF_001406395::NZ_CYZK01000004.1::G00014Context members
ARA05_RS04615ARA05_RS04620
Partner locus tags
ARA05_RS04615ARA05_RS04620
Partner old locus tags
ERS852481_00947ERS852481_00948
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055260814.1Primary protein accession used for annex mappings.
UniProt accessionA0A174ABW9Primary UniProt accession resolved in the annex database.
UniProt IDA0A174ABW9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA05_RS04620Primary locus identifier stored in the genes table.
Old locus tagERS852481_00948Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZK01000004.1Sequence record reported by the local genomic context database.
Genomic interval159 490-161 271 nt1 782 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span157 895-161 271 ntGCF_001406395::NZ_CYZK01000004.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406395::NZ_CYZK01000004.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZK01000004.1All displayed genes belong to this local TCS context.
Neighborhood span157 895-161 271 nt3 377 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
157 895 nt161 271 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA05_RS04615GCF_001406395#ARA05_RS04615
RRunclassified
157 895-159 493 nt · Forward (+)
ARA05_RS04620GCF_001406395#ARA05_RS04620
HKClassicCurrent focus
159 490-161 271 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406395#ARA05_RS04620The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1093566
Simplified PFAM architecture for HKOC_1093566
PFAM domain coverage: 241 / 593 aa (40.6%)
1 aa593 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[311-361] | His_kinase[378-453] | HATPase_c[472-585]
- Domain count: 3
- Matched identifier: HKOC_1093566
- Positioned domains: HAMP 311-361 ; His_kinase 378-453 ; HATPase_c 472-585
Cluster members and taxonomy
Representative gene: GCF_001406395#ARA05_RS04620
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_001406395
Assembly13470_2#85 · Scaffoldhaploid
Genome composition3 284 337 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 76 · HK 36 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key