1 HisKA#1
265-330 aa · 66 aa · 10.3% of protein
Raw token
HisKA:265:7.18e-18:330:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA05_RS02570
Histidine kinase, Hybrid
Coprococcus comes · GCF_001406395
ClassHKTypeHybridLength640 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001406395#ARA05_RS02570Stable P2CS identifier used across views.
GenomeGCF_001406395Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length640 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage292 / 640 aa (45.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa640 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
384-495 aa · 112 aa · 17.5% of protein
Raw token
HATPase_c:384:3.6e-29:495:112:1093 Response_reg#3
520-633 aa · 114 aa · 17.8% of protein
Raw token
Response_reg:520:2.88e-28:633:114:111- Raw architecture: HisKA:265:7.18e-18:330:66:64#HATPase_c:384:3.6e-29:495:112:109#Response_reg:520:2.88e-28:633:114:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001406395::NZ_CYZK01000002.1::G00010
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span240309-242231Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852481_00533RefSeq proteinWP_055260555.1
Context group ID
GCF_001406395::NZ_CYZK01000002.1::G00010Context members
ARA05_RS02570
Partner locus tags
ARA05_RS02570
Partner old locus tags
ERS852481_00533
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055260555.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA05_RS02570Primary locus identifier stored in the genes table.
Old locus tagERS852481_00533Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZK01000002.1Sequence record reported by the local genomic context database.
Genomic interval240 309-242 231 nt1 923 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span240 309-242 231 ntGCF_001406395::NZ_CYZK01000002.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406395::NZ_CYZK01000002.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZK01000002.1All displayed genes belong to this local TCS context.
Neighborhood span240 309-242 231 nt1 923 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
240 309 nt242 231 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA05_RS02570GCF_001406395#ARA05_RS02570
HKHybridCurrent focus
240 309-242 231 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406395#ARA05_RS02570The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0921305
Simplified PFAM architecture for HKOC_0921305
PFAM domain coverage: 295 / 640 aa (46.1%)
1 aa640 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[265-330] | HATPase_c[381-494] | Response_reg[520-634]
- Domain count: 3
- Matched identifier: HKOC_0921305
- Positioned domains: HisKA 265-330 ; HATPase_c 381-494 ; Response_reg 520-634
Cluster members and taxonomy
Representative gene: GCF_001406395#ARA05_RS02570
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_001406395
Assembly13470_2#85 · Scaffoldhaploid
Genome composition3 284 337 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 76 · HK 36 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key