1 PAS_3#1
155-239 aa · 85 aa · 13.3% of protein
Raw token
PAS_3:155:7.98e-16:239:88:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA05_RS02560
Histidine kinase, Hybrid
Coprococcus comes · GCF_001406395
ClassHKTypeHybridLength638 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_001406395#ARA05_RS02560Stable P2CS identifier used across views.
GenomeGCF_001406395Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
PAS_3HisKAHATPase_cResponse_reg
Protein length638 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage382 / 638 aa (59.9%)Merged over positioned domains only.
Domain description1 PAS_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa638 aa
Domain-by-domain annotation4 items
2 HisKA#2
264-330 aa · 67 aa · 10.5% of protein
Raw token
HisKA:264:0.00000000000000119:330:67:643 HATPase_c#3
379-495 aa · 117 aa · 18.3% of protein
Raw token
HATPase_c:379:6.04e-28:495:117:1094 Response_reg#4
518-630 aa · 113 aa · 17.7% of protein
Raw token
Response_reg:518:1.53e-27:630:113:111- Raw architecture: PAS_3:155:7.98e-16:239:88:89#HisKA:264:0.00000000000000119:330:67:64#HATPase_c:379:6.04e-28:495:117:109#Response_reg:518:1.53e-27:630:113:111
- Domain description: 1 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_001406395::NZ_CYZK01000002.1::G00009
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span229573-236314Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852481_00529RefSeq proteinWP_055260554.1
Context group ID
GCF_001406395::NZ_CYZK01000002.1::G00009Context members
ARA05_RS02550ARA05_RS02555ARA05_RS02560
Partner locus tags
ARA05_RS02550ARA05_RS02555ARA05_RS02560
Partner old locus tags
ERS852481_00526ERS852481_00527ERS852481_00529
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055260554.1Primary protein accession used for annex mappings.
UniProt accessionA0A173YGW4Primary UniProt accession resolved in the annex database.
UniProt IDA0A173YGW4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA05_RS02560Primary locus identifier stored in the genes table.
Old locus tagERS852481_00529Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZK01000002.1Sequence record reported by the local genomic context database.
Genomic interval234 398-236 314 nt1 917 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span229 573-236 314 ntGCF_001406395::NZ_CYZK01000002.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406395::NZ_CYZK01000002.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZK01000002.1All displayed genes belong to this local TCS context.
Neighborhood span229 573-236 314 nt6 742 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
229 573 nt236 314 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
ARA05_RS02550GCF_001406395#ARA05_RS02550
RRRpfG
229 573-231 063 nt · Forward (+)
ARA05_RS02555GCF_001406395#ARA05_RS02555
HKHybrid
231 289-234 147 nt · Forward (+)
ARA05_RS02560GCF_001406395#ARA05_RS02560
HKHybridCurrent focus
234 398-236 314 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406395#ARA05_RS02560The current gene is the representative for this cluster.
PFAM architecturePAS_3 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0926773
Simplified PFAM architecture for HKOC_0926773
PFAM domain coverage: 382 / 638 aa (59.9%)
1 aa638 aa
PAS_3HisKAHATPase_cResponse_reg
- Simplified architecture: PAS_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: PAS_3[155-239] | HisKA[264-330] | HATPase_c[380-495] | Response_reg[518-631]
- Domain count: 4
- Matched identifier: HKOC_0926773
- Positioned domains: PAS_3 155-239 ; HisKA 264-330 ; HATPase_c 380-495 ; Response_reg 518-631
Cluster members and taxonomy
Representative gene: GCF_001406395#ARA05_RS02560
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_001406395
Assembly13470_2#85 · Scaffoldhaploid
Genome composition3 284 337 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 76 · HK 36 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key