1 SBP_bac_3#1
43-259 aa · 217 aa · 22.8% of protein
Raw token
SBP_bac_3:43:2.02e-27:259:230:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA05_RS02555
Histidine kinase, Hybrid
Coprococcus comes · GCF_001406395
ClassHKTypeHybridLength952 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_001406395#ARA05_RS02555Stable P2CS identifier used across views.
GenomeGCF_001406395Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_cResponse_reg
Protein length952 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage702 / 952 aa (73.7%)Merged over positioned domains only.
Domain description2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa952 aa
Domain-by-domain annotation5 items
2 SBP_bac_3#2
299-482 aa · 184 aa · 19.3% of protein
Raw token
SBP_bac_3:299:1.97e-17:482:203:2243 HisKA#3
577-642 aa · 66 aa · 6.9% of protein
Raw token
HisKA:577:8.6e-17:642:66:644 HATPase_c#4
691-808 aa · 118 aa · 12.4% of protein
Raw token
HATPase_c:691:1.74e-26:808:118:1095 Response_reg#5
829-945 aa · 117 aa · 12.3% of protein
Raw token
Response_reg:829:9.44e-29:945:117:111- Raw architecture: SBP_bac_3:43:2.02e-27:259:230:224#SBP_bac_3:299:1.97e-17:482:203:224#HisKA:577:8.6e-17:642:66:64#HATPase_c:691:1.74e-26:808:118:109#Response_reg:829:9.44e-29:945:117:111
- Domain description: 2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_001406395::NZ_CYZK01000002.1::G00009
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span229573-236314Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852481_00527RefSeq proteinWP_055260553.1
Context group ID
GCF_001406395::NZ_CYZK01000002.1::G00009Context members
ARA05_RS02550ARA05_RS02555ARA05_RS02560
Partner locus tags
ARA05_RS02550ARA05_RS02555ARA05_RS02560
Partner old locus tags
ERS852481_00526ERS852481_00527ERS852481_00529
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055260553.1Primary protein accession used for annex mappings.
UniProt accessionA0A173YET8Primary UniProt accession resolved in the annex database.
UniProt IDA0A173YET8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA05_RS02555Primary locus identifier stored in the genes table.
Old locus tagERS852481_00527Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZK01000002.1Sequence record reported by the local genomic context database.
Genomic interval231 289-234 147 nt2 859 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span229 573-236 314 ntGCF_001406395::NZ_CYZK01000002.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406395::NZ_CYZK01000002.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZK01000002.1All displayed genes belong to this local TCS context.
Neighborhood span229 573-236 314 nt6 742 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
229 573 nt236 314 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
ARA05_RS02550GCF_001406395#ARA05_RS02550
RRRpfG
229 573-231 063 nt · Forward (+)
ARA05_RS02555GCF_001406395#ARA05_RS02555
HKHybridCurrent focus
231 289-234 147 nt · Forward (+)
ARA05_RS02560GCF_001406395#ARA05_RS02560
HKHybrid
234 398-236 314 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406395#ARA05_RS02555The current gene is the representative for this cluster.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0324528
Simplified PFAM architecture for HKOC_0324528
PFAM domain coverage: 497 / 952 aa (52.2%)
1 aa952 aa
SBP_bac_3HisKAHATPase_cResponse_reg
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SBP_bac_3[52-249] | HisKA[577-642] | HATPase_c[692-807] | Response_reg[829-945]
- Domain count: 4
- Matched identifier: HKOC_0324528
- Positioned domains: SBP_bac_3 52-249 ; HisKA 577-642 ; HATPase_c 692-807 ; Response_reg 829-945
Cluster members and taxonomy
Representative gene: GCF_001406395#ARA05_RS02555
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_001406395
Assembly13470_2#85 · Scaffoldhaploid
Genome composition3 284 337 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 76 · HK 36 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key