1 Response_reg#1
7-110 aa · 104 aa · 21.0% of protein
Raw token
Response_reg:7:1.36e-25:110:105:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA05_RS02550
Response regulator RpfG family
Coprococcus comes · GCF_001406395
ClassRRTypeRpfGLength496 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_001406395#ARA05_RS02550Stable P2CS identifier used across views.
GenomeGCF_001406395Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regHD
Protein length496 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage209 / 496 aa (42.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa496 aa
Domain-by-domain annotation2 items
2 HD#2
195-299 aa · 105 aa · 21.2% of protein
Raw token
HD:195:0.00000000000393:299:105:110- Raw architecture: Response_reg:7:1.36e-25:110:105:111#HD:195:0.00000000000393:299:105:110
- Domain description: 1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_001406395::NZ_CYZK01000002.1::G00009
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span229573-236314Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852481_00526RefSeq proteinWP_055260552.1
Context group ID
GCF_001406395::NZ_CYZK01000002.1::G00009Context members
ARA05_RS02550ARA05_RS02555ARA05_RS02560
Partner locus tags
ARA05_RS02550ARA05_RS02555ARA05_RS02560
Partner old locus tags
ERS852481_00526ERS852481_00527ERS852481_00529
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055260552.1Primary protein accession used for annex mappings.
UniProt accessionA0A173YEM5Primary UniProt accession resolved in the annex database.
UniProt IDA0A173YEM5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA05_RS02550Primary locus identifier stored in the genes table.
Old locus tagERS852481_00526Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZK01000002.1Sequence record reported by the local genomic context database.
Genomic interval229 573-231 063 nt1 491 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span229 573-236 314 ntGCF_001406395::NZ_CYZK01000002.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406395::NZ_CYZK01000002.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZK01000002.1All displayed genes belong to this local TCS context.
Neighborhood span229 573-236 314 nt6 742 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
229 573 nt236 314 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
ARA05_RS02550GCF_001406395#ARA05_RS02550
RRRpfGCurrent focus
229 573-231 063 nt · Forward (+)
ARA05_RS02555GCF_001406395#ARA05_RS02555
HKHybrid
231 289-234 147 nt · Forward (+)
ARA05_RS02560GCF_001406395#ARA05_RS02560
HKHybrid
234 398-236 314 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406395#ARA05_RS02550The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HD_52 domains in the representative PFAM annotation.
PFAM architecture for RROC_0162369
Simplified PFAM architecture for RROC_0162369
PFAM domain coverage: 246 / 496 aa (49.6%)
1 aa496 aa
Response_regHD_5
- Simplified architecture: Response_reg + HD_5
- Raw architecture: Response_reg[7-117] | HD_5[186-320]
- Domain count: 2
- Matched identifier: RROC_0162369
- Positioned domains: Response_reg 7-117 ; Response_reg 7-117 ; HD_5 186-320 ; HD_5 186-320
Cluster members and taxonomy
Representative gene: GCF_001406395#ARA05_RS02550
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_001406395
Assembly13470_2#85 · Scaffoldhaploid
Genome composition3 284 337 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 76 · HK 36 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key