1 HAMP#1
174-241 aa · 68 aa · 14.5% of protein
Raw token
HAMP:174:0.00000000000681:241:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA05_RS01425
Histidine kinase, Classic
Coprococcus comes · GCF_001406395
ClassHKTypeClassicLength470 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406395#ARA05_RS01425Stable P2CS identifier used across views.
GenomeGCF_001406395Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length470 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 470 aa (51.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa470 aa
Domain-by-domain annotation3 items
2 HisKA#2
246-305 aa · 60 aa · 12.8% of protein
Raw token
HisKA:246:4.88e-16:305:60:643 HATPase_c#3
357-469 aa · 113 aa · 24.0% of protein
Raw token
HATPase_c:357:7.01e-32:469:113:109- Raw architecture: HAMP:174:0.00000000000681:241:68:69#HisKA:246:4.88e-16:305:60:64#HATPase_c:357:7.01e-32:469:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406395::NZ_CYZK01000001.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span324476-326589Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852481_00301RefSeq proteinWP_022221095.1
Context group ID
GCF_001406395::NZ_CYZK01000001.1::G00008Context members
ARA05_RS01420ARA05_RS01425
Partner locus tags
ARA05_RS01420ARA05_RS01425
Partner old locus tags
ERS852481_00300ERS852481_00301
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022221095.1Primary protein accession used for annex mappings.
UniProt accessionA0A173R039Primary UniProt accession resolved in the annex database.
UniProt IDA0A173R039_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA05_RS01425Primary locus identifier stored in the genes table.
Old locus tagERS852481_00301Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZK01000001.1Sequence record reported by the local genomic context database.
Genomic interval325 177-326 589 nt1 413 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span324 476-326 589 ntGCF_001406395::NZ_CYZK01000001.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406395::NZ_CYZK01000001.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZK01000001.1All displayed genes belong to this local TCS context.
Neighborhood span324 476-326 589 nt2 114 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
324 476 nt326 589 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA05_RS01420GCF_001406395#ARA05_RS01420
RROmpR
324 476-325 177 nt · Forward (+)
ARA05_RS01425GCF_001406395#ARA05_RS01425
HKClassicCurrent focus
325 177-326 589 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404815#AQ995_RS00985Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1718138
Simplified PFAM architecture for HKOC_1718138
PFAM domain coverage: 219 / 470 aa (46.6%)
1 aa470 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[196-240] | HisKA[246-308] | HATPase_c[358-468]
- Domain count: 3
- Matched identifier: HKOC_1718138
- Positioned domains: HAMP 196-240 ; HisKA 246-308 ; HATPase_c 358-468
Cluster members and taxonomy
Representative gene: GCF_001404815#AQ995_RS00985
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_001406395
Assembly13470_2#85 · Scaffoldhaploid
Genome composition3 284 337 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 76 · HK 36 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key