1 HAMP#1
104-164 aa · 61 aa · 15.6% of protein
Raw token
HAMP:104:0.00000000151:164:61:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA05_RS01260
Histidine kinase, Classic
Coprococcus comes · GCF_001406395
ClassHKTypeClassicLength391 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406395#ARA05_RS01260Stable P2CS identifier used across views.
GenomeGCF_001406395Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length391 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage228 / 391 aa (58.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa391 aa
Domain-by-domain annotation3 items
2 HisKA#2
177-240 aa · 64 aa · 16.4% of protein
Raw token
HisKA:177:0.00000000215:240:64:643 HATPase_c#3
286-388 aa · 103 aa · 26.3% of protein
Raw token
HATPase_c:286:3.31e-21:388:105:109- Raw architecture: HAMP:104:0.00000000151:164:61:69#HisKA:177:0.00000000215:240:64:64#HATPase_c:286:3.31e-21:388:105:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406395::NZ_CYZK01000001.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span285529-287366Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852481_00266RefSeq proteinWP_242856230.1
Context group ID
GCF_001406395::NZ_CYZK01000001.1::G00007Context members
ARA05_RS01260ARA05_RS01265
Partner locus tags
ARA05_RS01260ARA05_RS01265
Partner old locus tags
ERS852481_00266ERS852481_00267
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_242856230.1Primary protein accession used for annex mappings.
UniProt accessionA0A173XAW4Primary UniProt accession resolved in the annex database.
UniProt IDA0A173XAW4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA05_RS01260Primary locus identifier stored in the genes table.
Old locus tagERS852481_00266Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZK01000001.1Sequence record reported by the local genomic context database.
Genomic interval285 529-286 704 nt1 176 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span285 529-287 366 ntGCF_001406395::NZ_CYZK01000001.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406395::NZ_CYZK01000001.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZK01000001.1All displayed genes belong to this local TCS context.
Neighborhood span285 529-287 366 nt1 838 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
285 529 nt287 366 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA05_RS01260GCF_001406395#ARA05_RS01260
HKClassicCurrent focus
285 529-286 704 nt · Reverse (-)
ARA05_RS01265GCF_001406395#ARA05_RS01265
RROmpR
286 692-287 366 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406395#ARA05_RS01260The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2519983
Simplified PFAM architecture for HKOC_2519983
PFAM domain coverage: 213 / 391 aa (54.5%)
1 aa391 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[116-164] | HisKA[178-239] | HATPase_c[286-387]
- Domain count: 3
- Matched identifier: HKOC_2519983
- Positioned domains: HAMP 116-164 ; HisKA 178-239 ; HATPase_c 286-387
Cluster members and taxonomy
Representative gene: GCF_001406395#ARA05_RS01260
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_001406395
Assembly13470_2#85 · Scaffoldhaploid
Genome composition3 284 337 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 76 · HK 36 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key