1 Response_reg#1
15-132 aa · 118 aa · 86.8% of protein
Raw token
Response_reg:15:1.48e-29:132:118:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA05_RS00435
Response regulator, CheY family
Coprococcus comes · GCF_001406395
ClassRRTypeCheYLength136 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001406395#ARA05_RS00435Stable P2CS identifier used across views.
GenomeGCF_001406395Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length136 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage118 / 136 aa (86.8%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa136 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:15:1.48e-29:132:118:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001406395::NZ_CYZK01000001.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span107420-107830Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852481_00094RefSeq proteinWP_195370985.1
Context group ID
GCF_001406395::NZ_CYZK01000001.1::G00002Context members
ARA05_RS00435
Partner locus tags
ARA05_RS00435
Partner old locus tags
ERS852481_00094
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195370985.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA05_RS00435Primary locus identifier stored in the genes table.
Old locus tagERS852481_00094Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZK01000001.1Sequence record reported by the local genomic context database.
Genomic interval107 420-107 830 nt411 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span107 420-107 830 ntGCF_001406395::NZ_CYZK01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406395::NZ_CYZK01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZK01000001.1All displayed genes belong to this local TCS context.
Neighborhood span107 420-107 830 nt411 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
107 420 nt107 830 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA05_RS00435GCF_001406395#ARA05_RS00435
RRCheYCurrent focus
107 420-107 830 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406395#ARA05_RS00435The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2283640
Simplified PFAM architecture for RROC_2283640
PFAM domain coverage: 117 / 136 aa (86.0%)
1 aa136 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[15-131]
- Domain count: 1
- Matched identifier: RROC_2283640
- Positioned domains: Response_reg 15-131 ; Response_reg 15-131
Cluster members and taxonomy
Representative gene: GCF_001406395#ARA05_RS00435
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_001406395
Assembly13470_2#85 · Scaffoldhaploid
Genome composition3 284 337 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 76 · HK 36 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key