1 HAMP#1
267-339 aa · 73 aa · 12.7% of protein
Raw token
HAMP:267:0.000000000000003:339:73:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA05_RS00210
Histidine kinase, Classic
Coprococcus comes · GCF_001406395
ClassHKTypeClassicLength573 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406395#ARA05_RS00210Stable P2CS identifier used across views.
GenomeGCF_001406395Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length573 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage255 / 573 aa (44.5%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa573 aa
Domain-by-domain annotation3 items
2 His_kinase#2
361-431 aa · 71 aa · 12.4% of protein
Raw token
His_kinase:361:5.37e-16:431:71:803 HATPase_c#3
454-564 aa · 111 aa · 19.4% of protein
Raw token
HATPase_c:454:0.000000000000885:564:112:109- Raw architecture: HAMP:267:0.000000000000003:339:73:69#His_kinase:361:5.37e-16:431:71:80#HATPase_c:454:0.000000000000885:564:112:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406395::NZ_CYZK01000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span51919-55310Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852481_00043RefSeq proteinWP_055260328.1
Context group ID
GCF_001406395::NZ_CYZK01000001.1::G00001Context members
ARA05_RS00210ARA05_RS00215
Partner locus tags
ARA05_RS00210ARA05_RS00215
Partner old locus tags
ERS852481_00043ERS852481_00044
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055260328.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA05_RS00210Primary locus identifier stored in the genes table.
Old locus tagERS852481_00043Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZK01000001.1Sequence record reported by the local genomic context database.
Genomic interval51 919-53 640 nt1 722 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span51 919-55 310 ntGCF_001406395::NZ_CYZK01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406395::NZ_CYZK01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZK01000001.1All displayed genes belong to this local TCS context.
Neighborhood span51 919-55 310 nt3 392 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
51 919 nt55 310 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA05_RS00210GCF_001406395#ARA05_RS00210
HKClassicCurrent focus
51 919-53 640 nt · Reverse (-)
ARA05_RS00215GCF_001406395#ARA05_RS00215
RRunclassified
53 718-55 310 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027697525#PG840_RS11000Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1077482
Simplified PFAM architecture for HKOC_1077482
PFAM domain coverage: 237 / 596 aa (39.8%)
1 aa596 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[313-362] | His_kinase[382-455] | HATPase_c[475-587]
- Domain count: 3
- Matched identifier: HKOC_1077482
- Positioned domains: HAMP 313-362 ; His_kinase 382-455 ; HATPase_c 475-587
Cluster members and taxonomy
Representative gene: GCF_027697525#PG840_RS11000
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_001406395
Assembly13470_2#85 · Scaffoldhaploid
Genome composition3 284 337 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 76 · HK 36 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key