1 Response_reg#1
5-114 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:5:3.89e-40:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA08_RS14800
Response regulator OmpR family
Eubacterium ramulus · GCF_001406295
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406295#ARA08_RS14800Stable P2CS identifier used across views.
GenomeGCF_001406295Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 229 aa (79.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-223 aa · 71 aa · 31.0% of protein
Raw token
Trans_reg_C:153:8.36e-27:223:74:77- Raw architecture: Response_reg:5:3.89e-40:114:111:111#Trans_reg_C:153:8.36e-27:223:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406295::NZ_CYYA01000037.1::G00039
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3049-5128Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852448_03027RefSeq proteinWP_055291354.1
Context group ID
GCF_001406295::NZ_CYYA01000037.1::G00039Context members
ARA08_RS14800ARA08_RS14805
Partner locus tags
ARA08_RS14800ARA08_RS14805
Partner old locus tags
ERS852448_03027ERS852448_03028
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055291354.1Primary protein accession used for annex mappings.
UniProt accessionA0A173VN57Primary UniProt accession resolved in the annex database.
UniProt IDA0A173VN57_EUBRADisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA08_RS14800Primary locus identifier stored in the genes table.
Old locus tagERS852448_03027Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYA01000037.1Sequence record reported by the local genomic context database.
Genomic interval3 049-3 738 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 049-5 128 ntGCF_001406295::NZ_CYYA01000037.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406295::NZ_CYYA01000037.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYA01000037.1All displayed genes belong to this local TCS context.
Neighborhood span3 049-5 128 nt2 080 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 049 nt5 128 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA08_RS14800GCF_001406295#ARA08_RS14800
RROmpRCurrent focus
3 049-3 738 nt · Forward (+)
ARA08_RS14805GCF_001406295#ARA08_RS14805
HKClassic
3 716-5 128 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406295#ARA08_RS14800The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1253481
Simplified PFAM architecture for RROC_1253481
PFAM domain coverage: 182 / 229 aa (79.5%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[152-223]
- Domain count: 2
- Matched identifier: RROC_1253481
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 152-223 ; Trans_reg_C 152-223
Cluster members and taxonomy
Representative gene: GCF_001406295#ARA08_RS14800
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 490 · GCF_001406295
Assembly13414_6#75 · Scaffoldhaploid
Genome composition3 307 376 bp · 43,0% GCEubacterium ramulus
Signal transduction countsGenes 68 · HK 34 · RR 33CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key