1 Response_reg#1
4-116 aa · 113 aa · 21.9% of protein
Raw token
Response_reg:4:1.81e-26:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA08_RS11970
Response regulator, unclassified
Eubacterium ramulus · GCF_001406295
ClassRRTypeunclassifiedLength515 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406295#ARA08_RS11970Stable P2CS identifier used across views.
GenomeGCF_001406295Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length515 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage181 / 515 aa (35.1%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa515 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
424-452 aa · 29 aa · 5.6% of protein
Raw token
HTH_AraC:424:0.0000112:452:29:423 HTH_AraC#3
465-503 aa · 39 aa · 7.6% of protein
Raw token
HTH_AraC:465:0.00000385:503:39:42- Raw architecture: Response_reg:4:1.81e-26:116:113:111#HTH_AraC:424:0.0000112:452:29:42#HTH_AraC:465:0.00000385:503:39:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406295::NZ_CYYA01000020.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span16247-19541Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852448_02448RefSeq proteinWP_055290691.1
Context group ID
GCF_001406295::NZ_CYYA01000020.1::G00030Context members
ARA08_RS11965ARA08_RS11970
Partner locus tags
ARA08_RS11965ARA08_RS11970
Partner old locus tags
ERS852448_02447ERS852448_02448
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055290691.1Primary protein accession used for annex mappings.
UniProt accessionA0A173V235Primary UniProt accession resolved in the annex database.
UniProt IDA0A173V235_EUBRADisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA08_RS11970Primary locus identifier stored in the genes table.
Old locus tagERS852448_02448Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYA01000020.1Sequence record reported by the local genomic context database.
Genomic interval17 994-19 541 nt1 548 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span16 247-19 541 ntGCF_001406295::NZ_CYYA01000020.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406295::NZ_CYYA01000020.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYA01000020.1All displayed genes belong to this local TCS context.
Neighborhood span16 247-19 541 nt3 295 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
16 247 nt19 541 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA08_RS11965GCF_001406295#ARA08_RS11965
HKClassic
16 247-18 016 nt · Reverse (-)
ARA08_RS11970GCF_001406295#ARA08_RS11970
RRunclassifiedCurrent focus
17 994-19 541 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406295#ARA08_RS11970The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0136291
Simplified PFAM architecture for RROC_0136291
PFAM domain coverage: 191 / 515 aa (37.1%)
1 aa515 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-115] | HTH_18[426-504]
- Domain count: 2
- Matched identifier: RROC_0136291
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; HTH_18 426-504 ; HTH_18 426-504
Cluster members and taxonomy
Representative gene: GCF_001406295#ARA08_RS11970
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 490 · GCF_001406295
Assembly13414_6#75 · Scaffoldhaploid
Genome composition3 307 376 bp · 43,0% GCEubacterium ramulus
Signal transduction countsGenes 68 · HK 34 · RR 33CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key