1 dCache_1#1
195-298 aa · 104 aa · 16.8% of protein
Raw token
dCache_1:195:0.00000686:298:113:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA08_RS01105
Histidine kinase, Classic
Eubacterium ramulus · GCF_001406295
ClassHKTypeClassicLength618 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001406295#ARA08_RS01105Stable P2CS identifier used across views.
GenomeGCF_001406295Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length618 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage369 / 618 aa (59.7%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation4 items
2 HAMP#2
319-394 aa · 76 aa · 12.3% of protein
Raw token
HAMP:319:0.000000427:394:76:693 His_kinase#3
409-489 aa · 81 aa · 13.1% of protein
Raw token
His_kinase:409:3.51e-32:489:81:804 HATPase_c#4
508-615 aa · 108 aa · 17.5% of protein
Raw token
HATPase_c:508:0.000000129:615:111:109- Raw architecture: dCache_1:195:0.00000686:298:113:195#HAMP:319:0.000000427:394:76:69#His_kinase:409:3.51e-32:489:81:80#HATPase_c:508:0.000000129:615:111:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001406295::NZ_CYYA01000001.1::G00002
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span224689-226545Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852448_00230RefSeq proteinWP_055288952.1
Context group ID
GCF_001406295::NZ_CYYA01000001.1::G00002Context members
ARA08_RS01105
Partner locus tags
ARA08_RS01105
Partner old locus tags
ERS852448_00230
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055288952.1Primary protein accession used for annex mappings.
UniProt accessionA0A173R658Primary UniProt accession resolved in the annex database.
UniProt IDA0A173R658_EUBRADisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA08_RS01105Primary locus identifier stored in the genes table.
Old locus tagERS852448_00230Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYA01000001.1Sequence record reported by the local genomic context database.
Genomic interval224 689-226 545 nt1 857 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span224 689-226 545 ntGCF_001406295::NZ_CYYA01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406295::NZ_CYYA01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYA01000001.1All displayed genes belong to this local TCS context.
Neighborhood span224 689-226 545 nt1 857 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
224 689 nt226 545 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA08_RS01105GCF_001406295#ARA08_RS01105
HKClassicCurrent focus
224 689-226 545 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406295#ARA08_RS01105The current gene is the representative for this cluster.
PFAM architecturedCache_1 + His_kinase2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0978061
Simplified PFAM architecture for HKOC_0978061
PFAM domain coverage: 282 / 618 aa (45.6%)
1 aa618 aa
dCache_1His_kinase
- Simplified architecture: dCache_1 + His_kinase
- Raw architecture: dCache_1[56-256] | His_kinase[409-489]
- Domain count: 2
- Matched identifier: HKOC_0978061
- Positioned domains: dCache_1 56-256 ; His_kinase 409-489
Cluster members and taxonomy
Representative gene: GCF_001406295#ARA08_RS01105
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 490 · GCF_001406295
Assembly13414_6#75 · Scaffoldhaploid
Genome composition3 307 376 bp · 43,0% GCEubacterium ramulus
Signal transduction countsGenes 68 · HK 34 · RR 33CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key