1 GAF_3#1
286-409 aa · 124 aa · 18.9% of protein
Raw token
GAF_3:286:0.000000104:409:130:129P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AYV37_RS02085
Histidine kinase, Classic
Faecalibacterium prausnitzii · GCF_001406255
ClassHKTypeClassicLength657 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406255#AYV37_RS02085Stable P2CS identifier used across views.
GenomeGCF_001406255Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
GAF_3HisKAHATPase_c
Protein length657 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage301 / 657 aa (45.8%)Merged over positioned domains only.
Domain description1 GAF_3,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa657 aa
Domain-by-domain annotation3 items
2 HisKA#2
429-496 aa · 68 aa · 10.4% of protein
Raw token
HisKA:429:0.0000000000139:496:68:643 HATPase_c#3
541-649 aa · 109 aa · 16.6% of protein
Raw token
HATPase_c:541:6.93e-28:649:109:109- Raw architecture: GAF_3:286:0.000000104:409:130:129#HisKA:429:0.0000000000139:496:68:64#HATPase_c:541:6.93e-28:649:109:109
- Domain description: 1 GAF_3,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406255::NZ_CYXN01000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span442336-445012Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAQ992_RS02075%2CERS852582_00429RefSeq proteinWP_155515357.1
Context group ID
GCF_001406255::NZ_CYXN01000001.1::G00003Context members
AYV37_RS02080AYV37_RS02085
Partner locus tags
AYV37_RS02080AYV37_RS02085
Partner old locus tags
AQ992_RS02070%2CERS852582_00428AQ992_RS02075%2CERS852582_00429
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_155515357.1Primary protein accession used for annex mappings.
UniProt accessionA0A173RCU2Primary UniProt accession resolved in the annex database.
UniProt IDA0A173RCU2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAYV37_RS02085Primary locus identifier stored in the genes table.
Old locus tagAQ992_RS02075%2CERS852582_00429Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYXN01000001.1Sequence record reported by the local genomic context database.
Genomic interval443 039-445 012 nt1 974 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span442 336-445 012 ntGCF_001406255::NZ_CYXN01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406255::NZ_CYXN01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYXN01000001.1All displayed genes belong to this local TCS context.
Neighborhood span442 336-445 012 nt2 677 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
442 336 nt445 012 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AYV37_RS02080GCF_001406255#AYV37_RS02080
RROmpR
442 336-443 046 nt · Reverse (-)
AYV37_RS02085GCF_001406255#AYV37_RS02085
HKClassicCurrent focus
443 039-445 012 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406255#AYV37_RS02085The current gene is the representative for this cluster.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0878927
Simplified PFAM architecture for HKOC_0878927
PFAM domain coverage: 285 / 657 aa (43.4%)
1 aa657 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[160-266] | HisKA[429-496] | HATPase_c[541-650]
- Domain count: 3
- Matched identifier: HKOC_0878927
- Positioned domains: DUF4118 160-266 ; HisKA 429-496 ; HATPase_c 541-650
Cluster members and taxonomy
Representative gene: GCF_001406255#AYV37_RS02085
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_001406255
Assembly14207_7#93 · Scaffoldhaploid
Genome composition3 054 197 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 51 · HK 22 · RR 28CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key