1 Response_reg#1
4-108 aa · 105 aa · 43.6% of protein
Raw token
Response_reg:4:8.06e-20:108:107:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA93_RS13275
Response regulator LytTR family
Hungatella hathewayi · GCF_001405995
ClassRRTypeLytTRLength241 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001405995#ARA93_RS13275Stable P2CS identifier used across views.
GenomeGCF_001405995Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage198 / 241 aa (82.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa241 aa
Domain-by-domain annotation2 items
2 LytTR#2
136-228 aa · 93 aa · 38.6% of protein
Raw token
LytTR:136:7.07e-21:228:98:98- Raw architecture: Response_reg:4:8.06e-20:108:107:111#LytTR:136:7.07e-21:228:98:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001405995::NZ_CZAZ01000012.1::G00054
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span160424-161149Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852528_02703RefSeq proteinWP_055650448.1
Context group ID
GCF_001405995::NZ_CZAZ01000012.1::G00054Context members
ARA93_RS13275
Partner locus tags
ARA93_RS13275
Partner old locus tags
ERS852528_02703
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055650448.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW9WIP9Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW9WIP9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA93_RS13275Primary locus identifier stored in the genes table.
Old locus tagERS852528_02703Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZAZ01000012.1Sequence record reported by the local genomic context database.
Genomic interval160 424-161 149 nt726 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span160 424-161 149 ntGCF_001405995::NZ_CZAZ01000012.1::G00054
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405995::NZ_CZAZ01000012.1::G00054Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZAZ01000012.1All displayed genes belong to this local TCS context.
Neighborhood span160 424-161 149 nt726 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
160 424 nt161 149 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA93_RS13275GCF_001405995#ARA93_RS13275
RRLytTRCurrent focus
160 424-161 149 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405995#ARA93_RS13275The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0864962
Simplified PFAM architecture for RROC_0864962
PFAM domain coverage: 201 / 241 aa (83.4%)
1 aa241 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-113] | LytTR[138-228]
- Domain count: 2
- Matched identifier: RROC_0864962
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; LytTR 138-228 ; LytTR 138-228
Cluster members and taxonomy
Representative gene: GCF_001405995#ARA93_RS13275
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_001405995
Assembly14207_7#39 · Scaffoldhaploid
Genome composition6 759 576 bp · 48,0% GCHungatella hathewayi
Signal transduction countsGenes 231 · HK 111 · RR 116CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key