1 Response_reg#1
3-114 aa · 112 aa · 46.7% of protein
Raw token
Response_reg:3:3.1e-24:114:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA93_RS11300
Response regulator LytTR family
Hungatella hathewayi · GCF_001405995
ClassRRTypeLytTRLength240 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405995#ARA93_RS11300Stable P2CS identifier used across views.
GenomeGCF_001405995Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage210 / 240 aa (87.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 LytTR#2
141-238 aa · 98 aa · 40.8% of protein
Raw token
LytTR:141:4.25e-22:238:98:98- Raw architecture: Response_reg:3:3.1e-24:114:114:111#LytTR:141:4.25e-22:238:98:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405995::NZ_CZAZ01000010.1::G00048
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span107572-110050Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852528_02298RefSeq proteinWP_055650249.1
Context group ID
GCF_001405995::NZ_CZAZ01000010.1::G00048Context members
ARA93_RS11295ARA93_RS11300
Partner locus tags
ARA93_RS11295ARA93_RS11300
Partner old locus tags
ERS852528_02297ERS852528_02298
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055650249.1Primary protein accession used for annex mappings.
UniProt accessionA0A174SRE1Primary UniProt accession resolved in the annex database.
UniProt IDA0A174SRE1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA93_RS11300Primary locus identifier stored in the genes table.
Old locus tagERS852528_02298Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZAZ01000010.1Sequence record reported by the local genomic context database.
Genomic interval109 328-110 050 nt723 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span107 572-110 050 ntGCF_001405995::NZ_CZAZ01000010.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405995::NZ_CZAZ01000010.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZAZ01000010.1All displayed genes belong to this local TCS context.
Neighborhood span107 572-110 050 nt2 479 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
107 572 nt110 050 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA93_RS11295GCF_001405995#ARA93_RS11295
HKClassic
107 572-109 293 nt · Forward (+)
ARA93_RS11300GCF_001405995#ARA93_RS11300
RRLytTRCurrent focus
109 328-110 050 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405995#ARA93_RS11300The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0884965
Simplified PFAM architecture for RROC_0884965
PFAM domain coverage: 209 / 240 aa (87.1%)
1 aa240 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-113] | LytTR[141-238]
- Domain count: 2
- Matched identifier: RROC_0884965
- Positioned domains: Response_reg 3-113 ; Response_reg 3-113 ; LytTR 141-238 ; LytTR 141-238
Cluster members and taxonomy
Representative gene: GCF_001405995#ARA93_RS11300
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_001405995
Assembly14207_7#39 · Scaffoldhaploid
Genome composition6 759 576 bp · 48,0% GCHungatella hathewayi
Signal transduction countsGenes 231 · HK 111 · RR 116CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key