1 Response_reg#1
8-112 aa · 105 aa · 8.3% of protein
Raw token
Response_reg:8:8.92e-23:112:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA93_RS10840
Response regulator, RpfG family
Hungatella hathewayi · GCF_001405995
ClassRRTypeRpfGLength1261 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001405995#ARA93_RS10840Stable P2CS identifier used across views.
GenomeGCF_001405995Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHDPAS_3GGDEF
Protein length1261 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage562 / 1261 aa (44.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 HD,2 PAS_3,1 GGDEFSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1261 aa
Domain-by-domain annotation5 items
2 HD#2
167-300 aa · 134 aa · 10.6% of protein
Raw token
HD:167:0.000000000000109:300:134:1103 PAS_3#3
554-629 aa · 76 aa · 6.0% of protein
Raw token
PAS_3:554:0.000000396:629:76:894 PAS_3#4
672-761 aa · 90 aa · 7.1% of protein
Raw token
PAS_3:672:0.0000000000696:761:92:895 GGDEF#5
778-934 aa · 157 aa · 12.5% of protein
Raw token
GGDEF:778:1.39e-47:934:160:160- Raw architecture: Response_reg:8:8.92e-23:112:106:111#HD:167:0.000000000000109:300:134:110#PAS_3:554:0.000000396:629:76:89#PAS_3:672:0.0000000000696:761:92:89#GGDEF:778:1.39e-47:934:160:160
- Domain description: 1 Response_reg,1 HD,2 PAS_3,1 GGDEF
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001405995::NZ_CZAZ01000010.1::G00046
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span8901-12686Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852528_02207RefSeq proteinWP_055650171.1
Context group ID
GCF_001405995::NZ_CZAZ01000010.1::G00046Context members
ARA93_RS10840
Partner locus tags
ARA93_RS10840
Partner old locus tags
ERS852528_02207
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055650171.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW9WL40Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW9WL40_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA93_RS10840Primary locus identifier stored in the genes table.
Old locus tagERS852528_02207Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZAZ01000010.1Sequence record reported by the local genomic context database.
Genomic interval8 901-12 686 nt3 786 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span8 901-12 686 ntGCF_001405995::NZ_CZAZ01000010.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405995::NZ_CZAZ01000010.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZAZ01000010.1All displayed genes belong to this local TCS context.
Neighborhood span8 901-12 686 nt3 786 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 901 nt12 686 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA93_RS10840GCF_001405995#ARA93_RS10840
RRRpfGCurrent focus
8 901-12 686 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405995#ARA93_RS10840The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HD_5 + PAS_3 + PAS_3 + GGDEF5 domains in the representative PFAM annotation.
PFAM architecture for RROC_0005872
Simplified PFAM architecture for RROC_0005872
PFAM domain coverage: 582 / 1261 aa (46.2%)
1 aa1261 aa
Response_regHD_5PAS_3PAS_3GGDEF
- Simplified architecture: Response_reg + HD_5 + PAS_3 + PAS_3 + GGDEF
- Raw architecture: Response_reg[8-119] | HD_5[170-320] | PAS_3[554-627] | PAS_3[673-761] | GGDEF[779-934]
- Domain count: 5
- Matched identifier: RROC_0005872
- Positioned domains: Response_reg 8-119 ; Response_reg 8-119 ; HD_5 170-320 ; HD_5 170-320 ; PAS_3 554-627 ; PAS_3 554-627 ; PAS_3 673-761 ; PAS_3 673-761 ; GGDEF 779-934 ; GGDEF 779-934
Cluster members and taxonomy
Representative gene: GCF_001405995#ARA93_RS10840
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_001405995
Assembly14207_7#39 · Scaffoldhaploid
Genome composition6 759 576 bp · 48,0% GCHungatella hathewayi
Signal transduction countsGenes 231 · HK 111 · RR 116CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key