1 Response_reg#1
4-113 aa · 110 aa · 48.2% of protein
Raw token
Response_reg:4:2.16e-33:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA93_RS08405
Response regulator OmpR family
Hungatella hathewayi · GCF_001405995
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405995#ARA93_RS08405Stable P2CS identifier used across views.
GenomeGCF_001405995Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 228 aa (82.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
144-221 aa · 78 aa · 34.2% of protein
Raw token
Trans_reg_C:144:6.54e-30:221:78:77- Raw architecture: Response_reg:4:2.16e-33:113:111:111#Trans_reg_C:144:6.54e-30:221:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405995::NZ_CZAZ01000007.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span104419-106129Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852528_01709RefSeq proteinWP_055649891.1
Context group ID
GCF_001405995::NZ_CZAZ01000007.1::G00040Context members
ARA93_RS08405ARA93_RS08410
Partner locus tags
ARA93_RS08405ARA93_RS08410
Partner old locus tags
ERS852528_01709ERS852528_01710
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055649891.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW9WKL3Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW9WKL3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA93_RS08405Primary locus identifier stored in the genes table.
Old locus tagERS852528_01709Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZAZ01000007.1Sequence record reported by the local genomic context database.
Genomic interval104 419-105 105 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span104 419-106 129 ntGCF_001405995::NZ_CZAZ01000007.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405995::NZ_CZAZ01000007.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZAZ01000007.1All displayed genes belong to this local TCS context.
Neighborhood span104 419-106 129 nt1 711 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
104 419 nt106 129 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA93_RS08405GCF_001405995#ARA93_RS08405
RROmpRCurrent focus
104 419-105 105 nt · Forward (+)
ARA93_RS08410GCF_001405995#ARA93_RS08410
HKClassic
105 092-106 129 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405995#ARA93_RS08405The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1308097
Simplified PFAM architecture for RROC_1308097
PFAM domain coverage: 188 / 228 aa (82.5%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[144-221]
- Domain count: 2
- Matched identifier: RROC_1308097
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 144-221 ; Trans_reg_C 144-221
Cluster members and taxonomy
Representative gene: GCF_001405995#ARA93_RS08405
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_001405995
Assembly14207_7#39 · Scaffoldhaploid
Genome composition6 759 576 bp · 48,0% GCHungatella hathewayi
Signal transduction countsGenes 231 · HK 111 · RR 116CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key