1 Response_reg#1
6-114 aa · 109 aa · 40.2% of protein
Raw token
Response_reg:6:9.59e-22:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA93_RS07815
Response regulator, unclassified
Hungatella hathewayi · GCF_001405995
ClassRRTypeunclassifiedLength271 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405995#ARA93_RS07815Stable P2CS identifier used across views.
GenomeGCF_001405995Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length271 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage109 / 271 aa (40.2%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa271 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:6:9.59e-22:114:111:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405995::NZ_CZAZ01000006.1::G00035
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span215820-218665Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852528_01588RefSeq proteinWP_006773747.1
Context group ID
GCF_001405995::NZ_CZAZ01000006.1::G00035Context members
ARA93_RS07815ARA93_RS07820
Partner locus tags
ARA93_RS07815ARA93_RS07820
Partner old locus tags
ERS852528_01588ERS852528_01589
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_006773747.1Primary protein accession used for annex mappings.
UniProt accessionD3AI34Primary UniProt accession resolved in the annex database.
UniProt IDD3AI34_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA93_RS07815Primary locus identifier stored in the genes table.
Old locus tagERS852528_01588Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZAZ01000006.1Sequence record reported by the local genomic context database.
Genomic interval215 820-216 635 nt816 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span215 820-218 665 ntGCF_001405995::NZ_CZAZ01000006.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405995::NZ_CZAZ01000006.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZAZ01000006.1All displayed genes belong to this local TCS context.
Neighborhood span215 820-218 665 nt2 846 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
215 820 nt218 665 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA93_RS07815GCF_001405995#ARA93_RS07815
RRunclassifiedCurrent focus
215 820-216 635 nt · Reverse (-)
ARA93_RS07820GCF_001405995#ARA93_RS07820
HKClassic
216 632-218 665 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000160095#CLOSTHATH_RS14550Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0611967
Simplified PFAM architecture for RROC_0611967
PFAM domain coverage: 109 / 271 aa (40.2%)
1 aa271 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[6-114]
- Domain count: 1
- Matched identifier: RROC_0611967
- Positioned domains: Response_reg 6-114 ; Response_reg 6-114
Cluster members and taxonomy
Representative gene: GCF_000160095#CLOSTHATH_RS14550
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_001405995
Assembly14207_7#39 · Scaffoldhaploid
Genome composition6 759 576 bp · 48,0% GCHungatella hathewayi
Signal transduction countsGenes 231 · HK 111 · RR 116CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key