1 Response_reg#1
7-120 aa · 114 aa · 19.9% of protein
Raw token
Response_reg:7:3.21e-27:120:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA93_RS07680
Response regulator, PleD_VieA family
Hungatella hathewayi · GCF_001405995
ClassRRTypePleD_VieALength574 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405995#ARA93_RS07680Stable P2CS identifier used across views.
GenomeGCF_001405995Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regGGDEFEAL
Protein length574 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage435 / 574 aa (75.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 GGDEF,1 EALSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa574 aa
Domain-by-domain annotation3 items
2 GGDEF#2
137-220 aa · 84 aa · 14.6% of protein
Raw token
GGDEF:137:0.0000000000002:220:86:1603 EAL#3
303-539 aa · 237 aa · 41.3% of protein
Raw token
EAL:303:7.34e-72:539:237:235- Raw architecture: Response_reg:7:3.21e-27:120:116:111#GGDEF:137:0.0000000000002:220:86:160#EAL:303:7.34e-72:539:237:235
- Domain description: 1 Response_reg,1 GGDEF,1 EAL
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405995::NZ_CZAZ01000006.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span175473-179749Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852528_01558RefSeq proteinWP_055649789.1
Context group ID
GCF_001405995::NZ_CZAZ01000006.1::G00033Context members
ARA93_RS07680ARA93_RS07685
Partner locus tags
ARA93_RS07680ARA93_RS07685
Partner old locus tags
ERS852528_01558ERS852528_01559
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055649789.1Primary protein accession used for annex mappings.
UniProt accessionA0A174QH81Primary UniProt accession resolved in the annex database.
UniProt IDA0A174QH81_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA93_RS07680Primary locus identifier stored in the genes table.
Old locus tagERS852528_01558Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZAZ01000006.1Sequence record reported by the local genomic context database.
Genomic interval175 473-177 197 nt1 725 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span175 473-179 749 ntGCF_001405995::NZ_CZAZ01000006.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405995::NZ_CZAZ01000006.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZAZ01000006.1All displayed genes belong to this local TCS context.
Neighborhood span175 473-179 749 nt4 277 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
175 473 nt179 749 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA93_RS07680GCF_001405995#ARA93_RS07680
RRPleD_VieACurrent focus
175 473-177 197 nt · Reverse (-)
ARA93_RS07685GCF_001405995#ARA93_RS07685
HKHybrid
177 323-179 749 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405995#ARA93_RS07680The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF + EAL3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0050919
Simplified PFAM architecture for RROC_0050919
PFAM domain coverage: 493 / 574 aa (85.9%)
1 aa574 aa
Response_regGGDEFEAL
- Simplified architecture: Response_reg + GGDEF + EAL
- Raw architecture: Response_reg[7-119] | GGDEF[136-280] | EAL[305-539]
- Domain count: 3
- Matched identifier: RROC_0050919
- Positioned domains: Response_reg 7-119 ; Response_reg 7-119 ; GGDEF 136-280 ; GGDEF 136-280 ; EAL 305-539 ; EAL 305-539
Cluster members and taxonomy
Representative gene: GCF_001405995#ARA93_RS07680
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_001405995
Assembly14207_7#39 · Scaffoldhaploid
Genome composition6 759 576 bp · 48,0% GCHungatella hathewayi
Signal transduction countsGenes 231 · HK 111 · RR 116CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key