1 HAMP#1
166-233 aa · 68 aa · 15.1% of protein
Raw token
HAMP:166:0.0000166:233:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA93_RS06790
Histidine kinase, Classic
Hungatella hathewayi · GCF_001405995
ClassHKTypeClassicLength450 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405995#ARA93_RS06790Stable P2CS identifier used across views.
GenomeGCF_001405995Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length450 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage217 / 450 aa (48.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa450 aa
Domain-by-domain annotation3 items
2 HisKA#2
244-305 aa · 62 aa · 13.8% of protein
Raw token
HisKA:244:0.000000000718:305:62:643 HATPase_c#3
360-446 aa · 87 aa · 19.3% of protein
Raw token
HATPase_c:360:0.000000000768:446:104:109- Raw architecture: HAMP:166:0.0000166:233:68:69#HisKA:244:0.000000000718:305:62:64#HATPase_c:360:0.000000000768:446:104:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405995::NZ_CZAZ01000005.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span209534-211565Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852528_01370RefSeq proteinWP_055649681.1
Context group ID
GCF_001405995::NZ_CZAZ01000005.1::G00025Context members
ARA93_RS06785ARA93_RS06790
Partner locus tags
ARA93_RS06785ARA93_RS06790
Partner old locus tags
ERS852528_01369ERS852528_01370
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055649681.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA93_RS06790Primary locus identifier stored in the genes table.
Old locus tagERS852528_01370Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZAZ01000005.1Sequence record reported by the local genomic context database.
Genomic interval210 213-211 565 nt1 353 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span209 534-211 565 ntGCF_001405995::NZ_CZAZ01000005.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405995::NZ_CZAZ01000005.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZAZ01000005.1All displayed genes belong to this local TCS context.
Neighborhood span209 534-211 565 nt2 032 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
209 534 nt211 565 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA93_RS06785GCF_001405995#ARA93_RS06785
RROmpR
209 534-210 220 nt · Forward (+)
ARA93_RS06790GCF_001405995#ARA93_RS06790
HKClassicCurrent focus
210 213-211 565 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405995#ARA93_RS06790The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1963332
Simplified PFAM architecture for HKOC_1963332
PFAM domain coverage: 189 / 450 aa (42.0%)
1 aa450 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[190-231] | HisKA[245-304] | HATPase_c[360-446]
- Domain count: 3
- Matched identifier: HKOC_1963332
- Positioned domains: HAMP 190-231 ; HisKA 245-304 ; HATPase_c 360-446
Cluster members and taxonomy
Representative gene: GCF_001405995#ARA93_RS06790
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_001405995
Assembly14207_7#39 · Scaffoldhaploid
Genome composition6 759 576 bp · 48,0% GCHungatella hathewayi
Signal transduction countsGenes 231 · HK 111 · RR 116CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key