1 Response_reg#1
4-112 aa · 109 aa · 47.8% of protein
Raw token
Response_reg:4:5.27e-34:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA93_RS06785
Response regulator OmpR family
Hungatella hathewayi · GCF_001405995
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405995#ARA93_RS06785Stable P2CS identifier used across views.
GenomeGCF_001405995Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 228 aa (82.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-227 aa · 78 aa · 34.2% of protein
Raw token
Trans_reg_C:150:2.49e-29:227:78:77- Raw architecture: Response_reg:4:5.27e-34:112:111:111#Trans_reg_C:150:2.49e-29:227:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405995::NZ_CZAZ01000005.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span209534-211565Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852528_01369RefSeq proteinWP_055649720.1
Context group ID
GCF_001405995::NZ_CZAZ01000005.1::G00025Context members
ARA93_RS06785ARA93_RS06790
Partner locus tags
ARA93_RS06785ARA93_RS06790
Partner old locus tags
ERS852528_01369ERS852528_01370
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055649720.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW9WJW2Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW9WJW2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA93_RS06785Primary locus identifier stored in the genes table.
Old locus tagERS852528_01369Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZAZ01000005.1Sequence record reported by the local genomic context database.
Genomic interval209 534-210 220 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span209 534-211 565 ntGCF_001405995::NZ_CZAZ01000005.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405995::NZ_CZAZ01000005.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZAZ01000005.1All displayed genes belong to this local TCS context.
Neighborhood span209 534-211 565 nt2 032 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
209 534 nt211 565 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA93_RS06785GCF_001405995#ARA93_RS06785
RROmpRCurrent focus
209 534-210 220 nt · Forward (+)
ARA93_RS06790GCF_001405995#ARA93_RS06790
HKClassic
210 213-211 565 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405995#ARA93_RS06785The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1308095
Simplified PFAM architecture for RROC_1308095
PFAM domain coverage: 186 / 228 aa (81.6%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-111] | Trans_reg_C[150-227]
- Domain count: 2
- Matched identifier: RROC_1308095
- Positioned domains: Response_reg 4-111 ; Response_reg 4-111 ; Trans_reg_C 150-227 ; Trans_reg_C 150-227
Cluster members and taxonomy
Representative gene: GCF_001405995#ARA93_RS06785
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_001405995
Assembly14207_7#39 · Scaffoldhaploid
Genome composition6 759 576 bp · 48,0% GCHungatella hathewayi
Signal transduction countsGenes 231 · HK 111 · RR 116CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key