1 dCache_1#1
180-300 aa · 121 aa · 19.8% of protein
Raw token
dCache_1:180:0.00000000395:300:126:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA93_RS06700
Histidine kinase, Classic
Hungatella hathewayi · GCF_001405995
ClassHKTypeClassicLength611 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405995#ARA93_RS06700Stable P2CS identifier used across views.
GenomeGCF_001405995Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length611 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage381 / 611 aa (62.4%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa611 aa
Domain-by-domain annotation4 items
2 HAMP#2
314-382 aa · 69 aa · 11.3% of protein
Raw token
HAMP:314:2.81e-16:382:69:693 His_kinase#3
398-477 aa · 80 aa · 13.1% of protein
Raw token
His_kinase:398:9.62e-25:477:80:804 HATPase_c#4
493-603 aa · 111 aa · 18.2% of protein
Raw token
HATPase_c:493:0.0000000000488:603:111:109- Raw architecture: dCache_1:180:0.00000000395:300:126:195#HAMP:314:2.81e-16:382:69:69#His_kinase:398:9.62e-25:477:80:80#HATPase_c:493:0.0000000000488:603:111:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405995::NZ_CZAZ01000005.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span185771-189129Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852528_01351RefSeq proteinWP_242866091.1
Context group ID
GCF_001405995::NZ_CZAZ01000005.1::G00024Context members
ARA93_RS06700ARA93_RS06705
Partner locus tags
ARA93_RS06700ARA93_RS06705
Partner old locus tags
ERS852528_01351ERS852528_01352
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_242866091.1Primary protein accession used for annex mappings.
UniProt accessionA0A174PHE7Primary UniProt accession resolved in the annex database.
UniProt IDA0A174PHE7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA93_RS06700Primary locus identifier stored in the genes table.
Old locus tagERS852528_01351Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZAZ01000005.1Sequence record reported by the local genomic context database.
Genomic interval185 771-187 606 nt1 836 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span185 771-189 129 ntGCF_001405995::NZ_CZAZ01000005.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405995::NZ_CZAZ01000005.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZAZ01000005.1All displayed genes belong to this local TCS context.
Neighborhood span185 771-189 129 nt3 359 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
185 771 nt189 129 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA93_RS06700GCF_001405995#ARA93_RS06700
HKClassicCurrent focus
185 771-187 606 nt · Forward (+)
ARA93_RS06705GCF_001405995#ARA93_RS06705
RRunclassified
187 603-189 129 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405995#ARA93_RS06700The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1001128
Simplified PFAM architecture for HKOC_1001128
PFAM domain coverage: 241 / 611 aa (39.4%)
1 aa611 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[331-382] | His_kinase[398-475] | HATPase_c[493-603]
- Domain count: 3
- Matched identifier: HKOC_1001128
- Positioned domains: HAMP 331-382 ; His_kinase 398-475 ; HATPase_c 493-603
Cluster members and taxonomy
Representative gene: GCF_001405995#ARA93_RS06700
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_001405995
Assembly14207_7#39 · Scaffoldhaploid
Genome composition6 759 576 bp · 48,0% GCHungatella hathewayi
Signal transduction countsGenes 231 · HK 111 · RR 116CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key