1 HAMP#1
285-354 aa · 70 aa · 12.2% of protein
Raw token
HAMP:285:0.000000000000279:354:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA93_RS06010
Histidine kinase, Classic
Hungatella hathewayi · GCF_001405995
ClassHKTypeClassicLength574 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405995#ARA93_RS06010Stable P2CS identifier used across views.
GenomeGCF_001405995Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length574 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage263 / 574 aa (45.8%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa574 aa
Domain-by-domain annotation3 items
2 His_kinase#2
369-448 aa · 80 aa · 13.9% of protein
Raw token
His_kinase:369:3.59e-30:448:80:803 HATPase_c#3
461-573 aa · 113 aa · 19.7% of protein
Raw token
HATPase_c:461:0.000000000000172:573:115:109- Raw architecture: HAMP:285:0.000000000000279:354:70:69#His_kinase:369:3.59e-30:448:80:80#HATPase_c:461:0.000000000000172:573:115:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405995::NZ_CZAZ01000005.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span14032-17383Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852528_01215RefSeq proteinWP_055649579.1
Context group ID
GCF_001405995::NZ_CZAZ01000005.1::G00022Context members
ARA93_RS06005ARA93_RS06010
Partner locus tags
ARA93_RS06005ARA93_RS06010
Partner old locus tags
ERS852528_01214ERS852528_01215
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055649579.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA93_RS06010Primary locus identifier stored in the genes table.
Old locus tagERS852528_01215Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZAZ01000005.1Sequence record reported by the local genomic context database.
Genomic interval15 659-17 383 nt1 725 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span14 032-17 383 ntGCF_001405995::NZ_CZAZ01000005.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405995::NZ_CZAZ01000005.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZAZ01000005.1All displayed genes belong to this local TCS context.
Neighborhood span14 032-17 383 nt3 352 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 032 nt17 383 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA93_RS06005GCF_001405995#ARA93_RS06005
RRunclassified
14 032-15 633 nt · Reverse (-)
ARA93_RS06010GCF_001405995#ARA93_RS06010
HKClassicCurrent focus
15 659-17 383 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009721605#GNE07_RS16905Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1116593
Simplified PFAM architecture for HKOC_1116593
PFAM domain coverage: 239 / 589 aa (40.6%)
1 aa589 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[318-369] | His_kinase[385-461] | HATPase_c[479-588]
- Domain count: 3
- Matched identifier: HKOC_1116593
- Positioned domains: HAMP 318-369 ; His_kinase 385-461 ; HATPase_c 479-588
Cluster members and taxonomy
Representative gene: GCF_009721605#GNE07_RS16905
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_001405995
Assembly14207_7#39 · Scaffoldhaploid
Genome composition6 759 576 bp · 48,0% GCHungatella hathewayi
Signal transduction countsGenes 231 · HK 111 · RR 116CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key