1 HAMP#1
303-367 aa · 65 aa · 10.4% of protein
Raw token
HAMP:303:0.0000000000041:367:65:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA93_RS04320
Histidine kinase, Classic
Hungatella hathewayi · GCF_001405995
ClassHKTypeClassicLength624 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405995#ARA93_RS04320Stable P2CS identifier used across views.
GenomeGCF_001405995Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length624 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage269 / 624 aa (43.1%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa624 aa
Domain-by-domain annotation3 items
2 His_kinase#2
387-466 aa · 80 aa · 12.8% of protein
Raw token
His_kinase:387:1.39e-25:466:80:803 HATPase_c#3
485-608 aa · 124 aa · 19.9% of protein
Raw token
HATPase_c:485:0.000000559:608:124:109- Raw architecture: HAMP:303:0.0000000000041:367:65:69#His_kinase:387:1.39e-25:466:80:80#HATPase_c:485:0.000000559:608:124:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405995::NZ_CZAZ01000003.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span212009-215487Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852528_00868RefSeq proteinWP_022033594.1
Context group ID
GCF_001405995::NZ_CZAZ01000003.1::G00019Context members
ARA93_RS04315ARA93_RS04320
Partner locus tags
ARA93_RS04315ARA93_RS04320
Partner old locus tags
ERS852528_00867ERS852528_00868
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022033594.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW9WFB2Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW9WFB2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA93_RS04320Primary locus identifier stored in the genes table.
Old locus tagERS852528_00868Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZAZ01000003.1Sequence record reported by the local genomic context database.
Genomic interval213 613-215 487 nt1 875 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span212 009-215 487 ntGCF_001405995::NZ_CZAZ01000003.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405995::NZ_CZAZ01000003.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZAZ01000003.1All displayed genes belong to this local TCS context.
Neighborhood span212 009-215 487 nt3 479 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
212 009 nt215 487 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA93_RS04315GCF_001405995#ARA93_RS04315
RRunclassified
212 009-213 616 nt · Reverse (-)
ARA93_RS04320GCF_001405995#ARA93_RS04320
HKClassicCurrent focus
213 613-215 487 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000433395#Q7A43_RS23885Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0961633
Simplified PFAM architecture for HKOC_0961633
PFAM domain coverage: 125 / 624 aa (20.0%)
1 aa624 aa
HAMPHis_kinase
- Simplified architecture: HAMP + His_kinase
- Raw architecture: HAMP[321-367] | His_kinase[388-465]
- Domain count: 2
- Matched identifier: HKOC_0961633
- Positioned domains: HAMP 321-367 ; His_kinase 388-465
Cluster members and taxonomy
Representative gene: GCF_000433395#Q7A43_RS23885
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_001405995
Assembly14207_7#39 · Scaffoldhaploid
Genome composition6 759 576 bp · 48,0% GCHungatella hathewayi
Signal transduction countsGenes 231 · HK 111 · RR 116CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key