1 HAMP#1
285-354 aa · 70 aa · 11.9% of protein
Raw token
HAMP:285:0.0000000356:354:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA93_RS04215
Histidine kinase, Classic
Hungatella hathewayi · GCF_001405995
ClassHKTypeClassicLength590 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405995#ARA93_RS04215Stable P2CS identifier used across views.
GenomeGCF_001405995Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length590 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage269 / 590 aa (45.6%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa590 aa
Domain-by-domain annotation3 items
2 His_kinase#2
369-448 aa · 80 aa · 13.6% of protein
Raw token
His_kinase:369:5.38e-28:448:80:803 HATPase_c#3
465-583 aa · 119 aa · 20.2% of protein
Raw token
HATPase_c:465:0.000000000000851:583:119:109- Raw architecture: HAMP:285:0.0000000356:354:70:69#His_kinase:369:5.38e-28:448:80:80#HATPase_c:465:0.000000000000851:583:119:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405995::NZ_CZAZ01000003.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span190371-192951Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852528_00846RefSeq proteinWP_055649332.1
Context group ID
GCF_001405995::NZ_CZAZ01000003.1::G00017Context members
ARA93_RS04215ARA93_RS04220
Partner locus tags
ARA93_RS04215ARA93_RS04220
Partner old locus tags
ERS852528_00846ERS852528_00847
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055649332.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW9WI62Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW9WI62_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA93_RS04215Primary locus identifier stored in the genes table.
Old locus tagERS852528_00846Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZAZ01000003.1Sequence record reported by the local genomic context database.
Genomic interval190 371-192 143 nt1 773 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span190 371-192 951 ntGCF_001405995::NZ_CZAZ01000003.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405995::NZ_CZAZ01000003.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZAZ01000003.1All displayed genes belong to this local TCS context.
Neighborhood span190 371-192 951 nt2 581 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
190 371 nt192 951 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA93_RS04215GCF_001405995#ARA93_RS04215
HKClassicCurrent focus
190 371-192 143 nt · Forward (+)
ARA93_RS04220GCF_001405995#ARA93_RS04220
RRunclassified
192 130-192 951 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405995#ARA93_RS04215The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1110585
Simplified PFAM architecture for HKOC_1110585
PFAM domain coverage: 195 / 590 aa (33.1%)
1 aa590 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[369-446] | HATPase_c[465-581]
- Domain count: 2
- Matched identifier: HKOC_1110585
- Positioned domains: His_kinase 369-446 ; HATPase_c 465-581
Cluster members and taxonomy
Representative gene: GCF_001405995#ARA93_RS04215
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_001405995
Assembly14207_7#39 · Scaffoldhaploid
Genome composition6 759 576 bp · 48,0% GCHungatella hathewayi
Signal transduction countsGenes 231 · HK 111 · RR 116CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key