1 PAS_9#1
309-413 aa · 105 aa · 9.9% of protein
Raw token
PAS_9:309:0.000000904:413:105:102P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA93_RS03700
Histidine kinase, Hybrid
Hungatella hathewayi · GCF_001405995
ClassHKTypeHybridLength1064 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001405995#ARA93_RS03700Stable P2CS identifier used across views.
GenomeGCF_001405995Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
PAS_9HisKAHATPase_cResponse_reg
Protein length1064 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage506 / 1064 aa (47.6%)Merged over positioned domains only.
Domain description1 PAS_9,1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1064 aa
Domain-by-domain annotation5 items
2 HisKA#2
564-630 aa · 67 aa · 6.3% of protein
Raw token
HisKA:564:3.43e-17:630:67:643 HATPase_c#3
678-789 aa · 112 aa · 10.5% of protein
Raw token
HATPase_c:678:1.66e-33:789:112:1094 Response_reg#4
804-917 aa · 114 aa · 10.7% of protein
Raw token
Response_reg:804:0.0000000000000129:917:114:1115 Response_reg#5
944-1051 aa · 108 aa · 10.2% of protein
Raw token
Response_reg:944:3.72e-23:1051:108:111- Raw architecture: PAS_9:309:0.000000904:413:105:102#HisKA:564:3.43e-17:630:67:64#HATPase_c:678:1.66e-33:789:112:109#Response_reg:804:0.0000000000000129:917:114:111#Response_reg:944:3.72e-23:1051:108:111
- Domain description: 1 PAS_9,1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001405995::NZ_CZAZ01000003.1::G00016
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span71333-74491Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852528_00741RefSeq proteinWP_055649271.1
Context group ID
GCF_001405995::NZ_CZAZ01000003.1::G00016Context members
ARA93_RS03700
Partner locus tags
ARA93_RS03700
Partner old locus tags
ERS852528_00741
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055649271.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW9WCD9Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW9WCD9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA93_RS03700Primary locus identifier stored in the genes table.
Old locus tagERS852528_00741Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZAZ01000003.1Sequence record reported by the local genomic context database.
Genomic interval71 333-74 491 nt3 159 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span71 333-74 491 ntGCF_001405995::NZ_CZAZ01000003.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405995::NZ_CZAZ01000003.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZAZ01000003.1All displayed genes belong to this local TCS context.
Neighborhood span71 333-74 491 nt3 159 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
71 333 nt74 491 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA93_RS03700GCF_001405995#ARA93_RS03700
HKHybridCurrent focus
71 333-74 491 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405995#ARA93_RS03700The current gene is the representative for this cluster.
PFAM architecturePAS_9 + PAS_9 + PAS_9 + HisKA + HATPase_c + Response_reg + Response_reg7 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0250535
Simplified PFAM architecture for HKOC_0250535
PFAM domain coverage: 721 / 1064 aa (67.8%)
1 aa1064 aa
PAS_9PAS_9PAS_9HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: PAS_9 + PAS_9 + PAS_9 + HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: PAS_9[42-145] | PAS_9[183-286] | PAS_9[309-413] | HisKA[564-630] | HATPase_c[678-788] | Response_reg[804-917] | Response_reg[944-1059]
- Domain count: 7
- Matched identifier: HKOC_0250535
- Positioned domains: PAS_9 42-145 ; PAS_9 183-286 ; PAS_9 309-413 ; HisKA 564-630 ; HATPase_c 678-788 ; Response_reg 804-917 ; Response_reg 944-1059
Cluster members and taxonomy
Representative gene: GCF_001405995#ARA93_RS03700
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_001405995
Assembly14207_7#39 · Scaffoldhaploid
Genome composition6 759 576 bp · 48,0% GCHungatella hathewayi
Signal transduction countsGenes 231 · HK 111 · RR 116CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key