1 His_kinase#1
376-449 aa · 74 aa · 12.6% of protein
Raw token
His_kinase:376:1.83e-20:449:74:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA93_RS02790
Histidine kinase, Classic
Hungatella hathewayi · GCF_001405995
ClassHKTypeClassicLength589 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405995#ARA93_RS02790Stable P2CS identifier used across views.
GenomeGCF_001405995Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
His_kinaseHATPase_c
Protein length589 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage130 / 589 aa (22.1%)Merged over positioned domains only.
Domain description1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa589 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
471-526 aa · 56 aa · 9.5% of protein
Raw token
HATPase_c:471:0.000000476:526:56:109- Raw architecture: His_kinase:376:1.83e-20:449:74:80#HATPase_c:471:0.000000476:526:56:109
- Domain description: 1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405995::NZ_CZAZ01000002.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span204303-207636Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852528_00557RefSeq proteinWP_055649121.1
Context group ID
GCF_001405995::NZ_CZAZ01000002.1::G00012Context members
ARA93_RS02785ARA93_RS02790
Partner locus tags
ARA93_RS02785ARA93_RS02790
Partner old locus tags
ERS852528_00556ERS852528_00557
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055649121.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA93_RS02790Primary locus identifier stored in the genes table.
Old locus tagERS852528_00557Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZAZ01000002.1Sequence record reported by the local genomic context database.
Genomic interval205 867-207 636 nt1 770 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span204 303-207 636 ntGCF_001405995::NZ_CZAZ01000002.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405995::NZ_CZAZ01000002.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZAZ01000002.1All displayed genes belong to this local TCS context.
Neighborhood span204 303-207 636 nt3 334 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
204 303 nt207 636 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA93_RS02785GCF_001405995#ARA93_RS02785
RRunclassified
204 303-205 892 nt · Reverse (-)
ARA93_RS02790GCF_001405995#ARA93_RS02790
HKClassicCurrent focus
205 867-207 636 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405995#ARA93_RS02790The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1115308
Simplified PFAM architecture for HKOC_1115308
PFAM domain coverage: 172 / 589 aa (29.2%)
1 aa589 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[377-449] | HATPase_c[471-569]
- Domain count: 2
- Matched identifier: HKOC_1115308
- Positioned domains: His_kinase 377-449 ; HATPase_c 471-569
Cluster members and taxonomy
Representative gene: GCF_001405995#ARA93_RS02790
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_001405995
Assembly14207_7#39 · Scaffoldhaploid
Genome composition6 759 576 bp · 48,0% GCHungatella hathewayi
Signal transduction countsGenes 231 · HK 111 · RR 116CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key