1 HAMP#1
178-241 aa · 64 aa · 13.9% of protein
Raw token
HAMP:178:0.000000000000997:241:64:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA93_RS01950
Histidine kinase, Classic
Hungatella hathewayi · GCF_001405995
ClassHKTypeClassicLength462 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405995#ARA93_RS01950Stable P2CS identifier used across views.
GenomeGCF_001405995Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length462 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage229 / 462 aa (49.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa462 aa
Domain-by-domain annotation3 items
2 HisKA#2
252-312 aa · 61 aa · 13.2% of protein
Raw token
HisKA:252:0.00000000000655:312:62:643 HATPase_c#3
357-460 aa · 104 aa · 22.5% of protein
Raw token
HATPase_c:357:4.73e-16:460:108:109- Raw architecture: HAMP:178:0.000000000000997:241:64:69#HisKA:252:0.00000000000655:312:62:64#HATPase_c:357:4.73e-16:460:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405995::NZ_CZAZ01000002.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span47581-49612Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852528_00383RefSeq proteinWP_055649052.1
Context group ID
GCF_001405995::NZ_CZAZ01000002.1::G00010Context members
ARA93_RS01950ARA93_RS01955
Partner locus tags
ARA93_RS01950ARA93_RS01955
Partner old locus tags
ERS852528_00383ERS852528_00384
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055649052.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW9WBA5Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW9WBA5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA93_RS01950Primary locus identifier stored in the genes table.
Old locus tagERS852528_00383Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZAZ01000002.1Sequence record reported by the local genomic context database.
Genomic interval47 581-48 969 nt1 389 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span47 581-49 612 ntGCF_001405995::NZ_CZAZ01000002.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405995::NZ_CZAZ01000002.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZAZ01000002.1All displayed genes belong to this local TCS context.
Neighborhood span47 581-49 612 nt2 032 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
47 581 nt49 612 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA93_RS01950GCF_001405995#ARA93_RS01950
HKClassicCurrent focus
47 581-48 969 nt · Reverse (-)
ARA93_RS01955GCF_001405995#ARA93_RS01955
RROmpR
48 962-49 612 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405995#ARA93_RS01950The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1808934
Simplified PFAM architecture for HKOC_1808934
PFAM domain coverage: 212 / 462 aa (45.9%)
1 aa462 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[190-241] | HisKA[253-312] | HATPase_c[358-457]
- Domain count: 3
- Matched identifier: HKOC_1808934
- Positioned domains: HAMP 190-241 ; HisKA 253-312 ; HATPase_c 358-457
Cluster members and taxonomy
Representative gene: GCF_001405995#ARA93_RS01950
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_001405995
Assembly14207_7#39 · Scaffoldhaploid
Genome composition6 759 576 bp · 48,0% GCHungatella hathewayi
Signal transduction countsGenes 231 · HK 111 · RR 116CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key