1 GAF#1
39-160 aa · 122 aa · 36.4% of protein
Raw token
GAF:39:0.00000827:160:122:133P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA93_RS01525
Response regulator, unclassified
Hungatella hathewayi · GCF_001405995
ClassRRTypeunclassifiedLength335 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_001405995#ARA93_RS01525Stable P2CS identifier used across views.
GenomeGCF_001405995Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
GAFResponse_reg
Protein length335 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage232 / 335 aa (69.3%)Merged over positioned domains only.
Domain description1 GAF,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa335 aa
Domain-by-domain annotation2 items
2 Response_reg#2
209-318 aa · 110 aa · 32.8% of protein
Raw token
Response_reg:209:2.38e-30:318:111:111- Raw architecture: GAF:39:0.00000827:160:122:133#Response_reg:209:2.38e-30:318:111:111
- Domain description: 1 GAF,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_001405995::NZ_CZAZ01000001.1::G00008
Group size33 locus tags listed below.
HK / RR1 / 2Counts resolved for the local TCS neighborhood.
Context span323127-327093Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852528_00303RefSeq proteinWP_055648976.1
Context group ID
GCF_001405995::NZ_CZAZ01000001.1::G00008Context members
ARA93_RS01525ARA93_RS01535ARA93_RS01540
Partner locus tags
ARA93_RS01525ARA93_RS01535ARA93_RS01540
Partner old locus tags
ERS852528_00303ERS852528_00305ERS852528_00306
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055648976.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW9WAT0Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW9WAT0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA93_RS01525Primary locus identifier stored in the genes table.
Old locus tagERS852528_00303Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZAZ01000001.1Sequence record reported by the local genomic context database.
Genomic interval323 127-324 134 nt1 008 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span323 127-327 093 ntGCF_001405995::NZ_CZAZ01000001.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405995::NZ_CZAZ01000001.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZAZ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span323 127-327 093 nt3 967 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
323 127 nt327 093 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
ARA93_RS01525GCF_001405995#ARA93_RS01525
RRunclassifiedCurrent focus
323 127-324 134 nt · Reverse (-)
ARA93_RS01535GCF_001405995#ARA93_RS01535
RROmpR
324 441-325 154 nt · Reverse (-)
ARA93_RS01540GCF_001405995#ARA93_RS01540
HKClassic
325 117-327 093 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405995#ARA93_RS01525The current gene is the representative for this cluster.
PFAM architectureGAF + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0511211
Simplified PFAM architecture for RROC_0511211
PFAM domain coverage: 230 / 335 aa (68.7%)
1 aa335 aa
GAFResponse_reg
- Simplified architecture: GAF + Response_reg
- Raw architecture: GAF[39-159] | Response_reg[209-317]
- Domain count: 2
- Matched identifier: RROC_0511211
- Positioned domains: GAF 39-159 ; GAF 39-159 ; Response_reg 209-317 ; Response_reg 209-317
Cluster members and taxonomy
Representative gene: GCF_001405995#ARA93_RS01525
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_001405995
Assembly14207_7#39 · Scaffoldhaploid
Genome composition6 759 576 bp · 48,0% GCHungatella hathewayi
Signal transduction countsGenes 231 · HK 111 · RR 116CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key