1 KdpD#1
24-232 aa · 209 aa · 23.2% of protein
Raw token
KdpD:24:1.85e-136:232:209:210P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AQ988_RS04905
Histidine kinase, Classic
Dorea longicatena · GCF_001405975
ClassHKTypeClassicLength899 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405975#AQ988_RS04905Stable P2CS identifier used across views.
GenomeGCF_001405975Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
KdpDHisKAHATPase_c
Protein length899 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage390 / 899 aa (43.4%)Merged over positioned domains only.
Domain description1 KdpD,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa899 aa
Domain-by-domain annotation3 items
2 HisKA#2
671-738 aa · 68 aa · 7.6% of protein
Raw token
HisKA:671:0.00000000000888:738:68:643 HATPase_c#3
782-894 aa · 113 aa · 12.6% of protein
Raw token
HATPase_c:782:2.47e-29:894:113:109- Raw architecture: KdpD:24:1.85e-136:232:209:210#HisKA:671:0.00000000000888:738:68:64#HATPase_c:782:2.47e-29:894:113:109
- Domain description: 1 KdpD,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405975::NZ_CYXO01000004.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span117751-121144Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852573_00999RefSeq proteinWP_055213845.1
Context group ID
GCF_001405975::NZ_CYXO01000004.1::G00009Context members
AQ988_RS04905AQ988_RS04910
Partner locus tags
AQ988_RS04905AQ988_RS04910
Partner old locus tags
ERS852573_00999ERS852573_01000
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055213845.1Primary protein accession used for annex mappings.
UniProt accessionA0A173SE80Primary UniProt accession resolved in the annex database.
UniProt IDA0A173SE80_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAQ988_RS04905Primary locus identifier stored in the genes table.
Old locus tagERS852573_00999Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYXO01000004.1Sequence record reported by the local genomic context database.
Genomic interval117 751-120 450 nt2 700 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span117 751-121 144 ntGCF_001405975::NZ_CYXO01000004.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405975::NZ_CYXO01000004.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYXO01000004.1All displayed genes belong to this local TCS context.
Neighborhood span117 751-121 144 nt3 394 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
117 751 nt121 144 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AQ988_RS04905GCF_001405975#AQ988_RS04905
HKClassicCurrent focus
117 751-120 450 nt · Forward (+)
AQ988_RS04910GCF_001405975#AQ988_RS04910
RROmpR
120 443-121 144 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405975#AQ988_RS04905The current gene is the representative for this cluster.
PFAM architectureKdpD + DUF4118 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0407559
Simplified PFAM architecture for HKOC_0407559
PFAM domain coverage: 493 / 899 aa (54.8%)
1 aa899 aa
KdpDDUF4118HisKAHATPase_c
- Simplified architecture: KdpD + DUF4118 + HisKA + HATPase_c
- Raw architecture: KdpD[24-232] | DUF4118[404-509] | HisKA[671-738] | HATPase_c[783-892]
- Domain count: 4
- Matched identifier: HKOC_0407559
- Positioned domains: KdpD 24-232 ; DUF4118 404-509 ; HisKA 671-738 ; HATPase_c 783-892
Cluster members and taxonomy
Representative gene: GCF_001405975#AQ988_RS04905
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_001405975
Assembly14207_7#84 · Scaffoldhaploid
Genome composition3 233 027 bp · 42,0% GCDorea longicatena
Signal transduction countsGenes 59 · HK 29 · RR 30CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key