1 dCache_1#1
44-281 aa · 238 aa · 39.9% of protein
Raw token
dCache_1:44:0.0000000000000921:281:242:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA98_RS17650
Histidine kinase, Classic
Hungatella hathewayi · GCF_001405675
ClassHKTypeClassicLength597 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405675#ARA98_RS17650Stable P2CS identifier used across views.
GenomeGCF_001405675Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length597 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage498 / 597 aa (83.4%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa597 aa
Domain-by-domain annotation4 items
2 HAMP#2
296-366 aa · 71 aa · 11.9% of protein
Raw token
HAMP:296:0.00000000000771:366:71:693 His_kinase#3
383-461 aa · 79 aa · 13.2% of protein
Raw token
His_kinase:383:7.09e-34:461:79:804 HATPase_c#4
477-586 aa · 110 aa · 18.4% of protein
Raw token
HATPase_c:477:5.58e-20:586:112:109- Raw architecture: dCache_1:44:0.0000000000000921:281:242:195#HAMP:296:0.00000000000771:366:71:69#His_kinase:383:7.09e-34:461:79:80#HATPase_c:477:5.58e-20:586:112:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405675::NZ_CYZE01000009.1::G00102
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span184802-188218Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852407_03546RefSeq proteinWP_025530741.1
Context group ID
GCF_001405675::NZ_CYZE01000009.1::G00102Context members
ARA98_RS17645ARA98_RS17650
Partner locus tags
ARA98_RS17645ARA98_RS17650
Partner old locus tags
ERS852407_03545ERS852407_03546
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025530741.1Primary protein accession used for annex mappings.
UniProt accessionA0A174H0M4Primary UniProt accession resolved in the annex database.
UniProt IDA0A174H0M4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA98_RS17650Primary locus identifier stored in the genes table.
Old locus tagERS852407_03546Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZE01000009.1Sequence record reported by the local genomic context database.
Genomic interval186 425-188 218 nt1 794 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span184 802-188 218 ntGCF_001405675::NZ_CYZE01000009.1::G00102
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405675::NZ_CYZE01000009.1::G00102Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZE01000009.1All displayed genes belong to this local TCS context.
Neighborhood span184 802-188 218 nt3 417 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
184 802 nt188 218 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA98_RS17645GCF_001405675#ARA98_RS17645
RRunclassified
184 802-186 424 nt · Forward (+)
ARA98_RS17650GCF_001405675#ARA98_RS17650
HKClassicCurrent focus
186 425-188 218 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405675#ARA98_RS17650The current gene is the representative for this cluster.
PFAM architecturedCache_1 + HAMP + His_kinase + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1069121
Simplified PFAM architecture for HKOC_1069121
PFAM domain coverage: 473 / 597 aa (79.2%)
1 aa597 aa
dCache_1HAMPHis_kinaseHATPase_c
- Simplified architecture: dCache_1 + HAMP + His_kinase + HATPase_c
- Raw architecture: dCache_1[47-280] | HAMP[316-366] | His_kinase[383-461] | HATPase_c[476-584]
- Domain count: 4
- Matched identifier: HKOC_1069121
- Positioned domains: dCache_1 47-280 ; HAMP 316-366 ; His_kinase 383-461 ; HATPase_c 476-584
Cluster members and taxonomy
Representative gene: GCF_001405675#ARA98_RS17650
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_001405675
Assembly13414_6#34 · Scaffoldhaploid
Genome composition6 979 496 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 277 · HK 136 · RR 137CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key