1 HAMP#1
185-255 aa · 71 aa · 14.3% of protein
Raw token
HAMP:185:0.0000000000000057:255:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA98_RS04460
Histidine kinase, Classic
Hungatella hathewayi · GCF_001405675
ClassHKTypeClassicLength498 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405675#ARA98_RS04460Stable P2CS identifier used across views.
GenomeGCF_001405675Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length498 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage253 / 498 aa (50.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa498 aa
Domain-by-domain annotation3 items
2 HisKA#2
266-333 aa · 68 aa · 13.7% of protein
Raw token
HisKA:266:0.00000000000000346:333:68:643 HATPase_c#3
380-493 aa · 114 aa · 22.9% of protein
Raw token
HATPase_c:380:4.6e-34:493:114:109- Raw architecture: HAMP:185:0.0000000000000057:255:71:69#HisKA:266:0.00000000000000346:333:68:64#HATPase_c:380:4.6e-34:493:114:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405675::NZ_CYZE01000002.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span39683-41865Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852407_00899RefSeq proteinWP_002605021.1
Context group ID
GCF_001405675::NZ_CYZE01000002.1::G00029Context members
ARA98_RS04460ARA98_RS04465
Partner locus tags
ARA98_RS04460ARA98_RS04465
Partner old locus tags
ERS852407_00899ERS852407_00900
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002605021.1Primary protein accession used for annex mappings.
UniProt accessionA0A2V3YCU7Primary UniProt accession resolved in the annex database.
UniProt IDA0A2V3YCU7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA98_RS04460Primary locus identifier stored in the genes table.
Old locus tagERS852407_00899Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZE01000002.1Sequence record reported by the local genomic context database.
Genomic interval39 683-41 179 nt1 497 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span39 683-41 865 ntGCF_001405675::NZ_CYZE01000002.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405675::NZ_CYZE01000002.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZE01000002.1All displayed genes belong to this local TCS context.
Neighborhood span39 683-41 865 nt2 183 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
39 683 nt41 865 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA98_RS04460GCF_001405675#ARA98_RS04460
HKClassicCurrent focus
39 683-41 179 nt · Forward (+)
ARA98_RS04465GCF_001405675#ARA98_RS04465
RROmpR
41 176-41 865 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS26340Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1487209
Simplified PFAM architecture for HKOC_1487209
PFAM domain coverage: 229 / 498 aa (46.0%)
1 aa498 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[203-255] | HisKA[268-332] | HATPase_c[381-491]
- Domain count: 3
- Matched identifier: HKOC_1487209
- Positioned domains: HAMP 203-255 ; HisKA 268-332 ; HATPase_c 381-491
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS26340
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_001405675
Assembly13414_6#34 · Scaffoldhaploid
Genome composition6 979 496 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 277 · HK 136 · RR 137CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key