1 Response_reg#1
81-197 aa · 117 aa · 34.0% of protein
Raw token
Response_reg:81:1.83e-19:197:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA30_RS16305
Response regulator, FrzZ family
Anaerostipes hadrus · GCF_001405635
ClassRRTypeFrzZLength344 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001405635#ARA30_RS16305Stable P2CS identifier used across views.
GenomeGCF_001405635Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length344 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage234 / 344 aa (68.0%)Merged over positioned domains only.
Domain description2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa344 aa
Domain-by-domain annotation2 items
2 Response_reg#2
225-341 aa · 117 aa · 34.0% of protein
Raw token
Response_reg:225:4.7e-30:341:117:111- Raw architecture: Response_reg:81:1.83e-19:197:117:111#Response_reg:225:4.7e-30:341:117:111
- Domain description: 2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001405635::NZ_CYXY01000005.1::G00010
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span190221-191255Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852571_01133RefSeq proteinWP_334291886.1
Context group ID
GCF_001405635::NZ_CYXY01000005.1::G00010Context members
ARA30_RS16305
Partner locus tags
ARA30_RS16305
Partner old locus tags
ERS852571_01133
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_334291886.1Primary protein accession used for annex mappings.
UniProt accessionA0A173SD77Primary UniProt accession resolved in the annex database.
UniProt IDA0A173SD77_ANAHADisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA30_RS16305Primary locus identifier stored in the genes table.
Old locus tagERS852571_01133Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYXY01000005.1Sequence record reported by the local genomic context database.
Genomic interval190 221-191 255 nt1 035 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span190 221-191 255 ntGCF_001405635::NZ_CYXY01000005.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405635::NZ_CYXY01000005.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYXY01000005.1All displayed genes belong to this local TCS context.
Neighborhood span190 221-191 255 nt1 035 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
190 221 nt191 255 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA30_RS16305GCF_001405635#ARA30_RS16305
RRFrzZCurrent focus
190 221-191 255 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405635#ARA30_RS16305The current gene is the representative for this cluster.
PFAM architectureHATPase_c + Response_reg + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0494517
Simplified PFAM architecture for RROC_0494517
PFAM domain coverage: 295 / 344 aa (85.8%)
1 aa344 aa
HATPase_cResponse_regResponse_reg
- Simplified architecture: HATPase_c + Response_reg + Response_reg
- Raw architecture: HATPase_c[1-63] | Response_reg[81-196] | Response_reg[225-340]
- Domain count: 3
- Matched identifier: RROC_0494517
- Positioned domains: HATPase_c 1-63 ; HATPase_c 1-63 ; Response_reg 81-196 ; Response_reg 81-196 ; Response_reg 225-340 ; Response_reg 225-340
Cluster members and taxonomy
Representative gene: GCF_001405635#ARA30_RS16305
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_001405635
Assembly14207_7#82 · Scaffoldhaploid
Genome composition3 159 004 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 49 · HK 23 · RR 24CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key