1 Response_reg#1
5-112 aa · 108 aa · 49.1% of protein
Raw token
Response_reg:5:4.45e-34:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA30_RS01055
Response regulator OmpR family
Anaerostipes hadrus · GCF_001405635
ClassRRTypeOmpRLength220 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405635#ARA30_RS01055Stable P2CS identifier used across views.
GenomeGCF_001405635Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length220 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 220 aa (82.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa220 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-219 aa · 74 aa · 33.6% of protein
Raw token
Trans_reg_C:146:1.37e-25:219:76:77- Raw architecture: Response_reg:5:4.45e-34:112:110:111#Trans_reg_C:146:1.37e-25:219:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405635::NZ_CYXY01000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span212230-214259Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852571_00214RefSeq proteinWP_172678098.1
Context group ID
GCF_001405635::NZ_CYXY01000001.1::G00003Context members
ARA30_RS01055ARA30_RS01060
Partner locus tags
ARA30_RS01055ARA30_RS01060
Partner old locus tags
ERS852571_00214ERS852571_00215
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_172678098.1Primary protein accession used for annex mappings.
UniProt accessionA0A8I0DQM8Primary UniProt accession resolved in the annex database.
UniProt IDA0A8I0DQM8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA30_RS01055Primary locus identifier stored in the genes table.
Old locus tagERS852571_00214Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYXY01000001.1Sequence record reported by the local genomic context database.
Genomic interval212 230-212 892 nt663 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span212 230-214 259 ntGCF_001405635::NZ_CYXY01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405635::NZ_CYXY01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYXY01000001.1All displayed genes belong to this local TCS context.
Neighborhood span212 230-214 259 nt2 030 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
212 230 nt214 259 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA30_RS01055GCF_001405635#ARA30_RS01055
RROmpRCurrent focus
212 230-212 892 nt · Forward (+)
ARA30_RS01060GCF_001405635#ARA30_RS01060
HKClassic
212 883-214 259 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405635#ARA30_RS01055The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1727208
Simplified PFAM architecture for RROC_1727208
PFAM domain coverage: 180 / 220 aa (81.8%)
1 aa220 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-111] | Trans_reg_C[146-218]
- Domain count: 2
- Matched identifier: RROC_1727208
- Positioned domains: Response_reg 5-111 ; Response_reg 5-111 ; Trans_reg_C 146-218 ; Trans_reg_C 146-218
Cluster members and taxonomy
Representative gene: GCF_001405635#ARA30_RS01055
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_001405635
Assembly14207_7#82 · Scaffoldhaploid
Genome composition3 159 004 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 49 · HK 23 · RR 24CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key